C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alveolar soft part sarcoma chromosome region, candidate 1 (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025142 Aspscr1 10090 + 11:120672973-120709447 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026135 Aspscr1-001 120672992-120709447 protein_coding
  ENSMUST00000103016 Aspscr1-002 120673064-120709444 protein_coding
  ENSMUST00000106158 Aspscr1-201 120673056-120709444 protein_coding
  ENSMUST00000106159 Aspscr1-202 120676661-120709444 protein_coding
  ENSMUST00000106160 Aspscr1-009 120676661-120709442 protein_coding
  ENSMUST00000127269 Aspscr1-005 120673374-120678453 protein_coding
  ENSMUST00000129644 Aspscr1-010 120677226-120678445 protein_coding
  ENSMUST00000131727 Aspscr1-007 120673374-120689167 protein_coding
  ENSMUST00000135346 Aspscr1-004 120673359-120689171 protein_coding
  ENSMUST00000143844 Aspscr1-017 120673098-120689068 nonsense_mediated_decay
  ENSMUST00000149389 Aspscr1-003 120673392-120689127 protein_coding
  ENSMUST00000151160 Aspscr1-011 120677339-120689297 protein_coding
  ENSMUST00000151531 Aspscr1-013 120708760-120709447 retained_intron
  ENSMUST00000152990 Aspscr1-012 120708658-120709442 retained_intron
  ENSMUST00000153346 Aspscr1-006 120673404-120686701 protein_coding
  ENSMUST00000166838 Aspscr1-008 120689274-120709443 nonsense_mediated_decay
  ENSMUST00000167678 Aspscr1-019 120689310-120709241 protein_coding
  ENSMUST00000168097 Aspscr1-022 120673063-120701564 nonsense_mediated_decay
  ENSMUST00000168510 Aspscr1-023 120686693-120709443 protein_coding
  ENSMUST00000168714 Aspscr1-018 120673083-120709072 protein_coding
  ENSMUST00000168947 Aspscr1-020 120702514-120709444 nonsense_mediated_decay
  ENSMUST00000169964 Aspscr1-014 120672973-120674346 retained_intron
  ENSMUST00000171700 Aspscr1-015 120673026-120675982 retained_intron
  ENSMUST00000172392 Aspscr1-021 120708858-120709445 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026135ENSMUST00000103016ENSMUST00000106158ENSMUST00000106159ENSMUST00000131727ENSMUST00000135346ENSMUST00000166838ENSMUST00000168097ENSMUST00000171700
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026135 20.860±3.82 35.441±3.77 17.587±0.93 31.611±2.91 22.605±4.31 25.113±2.42 8.342±1.76 29.122±3.74 23.765±11.09 25.087±1.38 7.582±1.26 28.897±4.99 16.510±2.85 65.585±5.53
ENSMUST00000103016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.992±5.52 N/A
ENSMUST00000106158 N/A N/A N/A N/A N/A N/A 2.732±0.00 N/A 4.149±0.55 N/A 1.890±0.35 N/A 12.809±0.00 18.535±4.80
ENSMUST00000106159 N/A N/A N/A 12.378±0.00 5.847±0.00 N/A N/A N/A N/A N/A 4.132±0.76 24.016±7.36 8.712±2.81 26.334±0.00
ENSMUST00000131727 N/A N/A N/A N/A N/A 26.758±1.82 4.957±0.00 N/A N/A N/A N/A 36.733±0.51 N/A 45.815±2.71
ENSMUST00000135346 16.768±1.25 N/A N/A N/A 17.634±1.28 N/A 4.855±1.62 15.930±1.72 21.415±1.53 N/A N/A 26.840±0.00 N/A N/A
ENSMUST00000166838 N/A N/A N/A 9.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 15.890±4.94 N/A
ENSMUST00000168097 N/A N/A N/A 18.943±0.00 N/A N/A N/A N/A N/A N/A N/A 36.797±2.79 21.067±8.16 133.265±0.00
ENSMUST00000171700 N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0002 CGP 11:120653788-120709447
CIL_0004VS CIL_0004VS_0002 CGP 11:120672973-120713738

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006886 IDA intracellular protein transport
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0012506 IDA vesicle membrane
GO:0019898 IDA extrinsic component of membrane
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0042593 IDA glucose homeostasis
GO:0046324 IDA regulation of glucose import
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089727 aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 protein_coding Danio_rerio
ENSDARG00000090657 aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 protein_coding Danio_rerio
ENSG00000169696 ASPSCR1 alveolar soft part sarcoma chromosome region, candidate 1 protein_coding Homo_sapiens

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