C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alveolar soft part sarcoma chromosome region, candidate 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026135 Aspscr1-001 ENSMUSG00000025142 10090 + 11:120672992-120709447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026135 20.860±3.82 35.441±3.77 17.587±0.93 31.611±2.91 22.605±4.31 25.113±2.42 8.342±1.76 29.122±3.74 23.765±11.09 25.087±1.38 7.582±1.26 28.897±4.99 16.510±2.85 65.585±5.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0002 CGP 11:120653788-120709447
CIL_0004VS CIL_0004VS_0002 CGP 11:120672973-120713738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006886 IDA intracellular protein transport
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0012506 IDA vesicle membrane
GO:0019898 IDA extrinsic component of membrane
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0042593 IDA glucose homeostasis
GO:0046324 IDA regulation of glucose import
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306729 ASPSCR1-002 protein_coding Homo_sapiens 0 678
ENST00000306739 ASPSCR1-001 protein_coding Homo_sapiens 0 780
ENST00000344865 ASPSCR1-010 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000577733 ASPSCR1-005 retained_intron Homo_sapiens 0 780
ENST00000578236 ASPSCR1-006 retained_intron Homo_sapiens 0 569
ENST00000579684 ASPSCR1-013 protein_coding Homo_sapiens 0 442
ENST00000580534 ASPSCR1-003 protein_coding Homo_sapiens 0 422
ENST00000581484 ASPSCR1-009 protein_coding Homo_sapiens 0 435
ENST00000581608 ASPSCR1-007 retained_intron Homo_sapiens 0 691
ENST00000581647 ASPSCR1-012 protein_coding Homo_sapiens 0 555
ENST00000582019 ASPSCR1-011 protein_coding Homo_sapiens 9.99967e-42 174
ENST00000582355 ASPSCR1-014 protein_coding Homo_sapiens 0 621
ENST00000583503 ASPSCR1-015 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000584454 ASPSCR1-004 nonsense_mediated_decay Homo_sapiens 0 435

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