C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alveolar soft part sarcoma chromosome region, candidate 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169696 ASPSCR1 9606 + 17:81976807-82017406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306729 ASPSCR1-002 81977550-82017404 protein_coding
  ENST00000306739 ASPSCR1-001 81977550-82017406 protein_coding
  ENST00000344865 ASPSCR1-010 81977602-81996846 nonsense_mediated_decay
  ENST00000577733 ASPSCR1-005 82004345-82017404 retained_intron
  ENST00000578236 ASPSCR1-006 82006642-82017404 retained_intron
  ENST00000578361 ASPSCR1-019 82012084-82017403 retained_intron
  ENST00000579684 ASPSCR1-013 81977705-81995147 protein_coding
  ENST00000580534 ASPSCR1-003 81977634-82017404 protein_coding
  ENST00000581484 ASPSCR1-009 81976807-81996843 protein_coding
  ENST00000581608 ASPSCR1-007 82007435-82017403 retained_intron
  ENST00000581647 ASPSCR1-012 81977631-81995150 protein_coding
  ENST00000582019 ASPSCR1-011 81977899-81983626 protein_coding
  ENST00000582355 ASPSCR1-014 81995443-82017037 protein_coding
  ENST00000582404 ASPSCR1-021 82015214-82017404 processed_transcript
  ENST00000583142 ASPSCR1-020 82012882-82017401 processed_transcript
  ENST00000583503 ASPSCR1-015 81977641-82010825 nonsense_mediated_decay
  ENST00000583693 ASPSCR1-008 82013234-82017404 retained_intron
  ENST00000583744 ASPSCR1-018 82010811-82017403 protein_coding
  ENST00000584454 ASPSCR1-004 81978186-82017406 nonsense_mediated_decay
  ENST00000585140 ASPSCR1-022 82016194-82017370 processed_transcript
  ENST00000585274 ASPSCR1-017 82009486-82017369 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306729ENST00000306739ENST00000577733ENST00000579684ENST00000580534ENST00000581484ENST00000582019ENST00000582355ENST00000583503ENST00000583693ENST00000583744ENST00000584454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306729 N/A N/A N/A N/A N/A 1.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000306739 4.116±0.00 8.491±0.00 0.499±0.00 3.199±1.73 4.195±0.00 1.371±0.09 3.366±0.00 5.561±2.92 10.696±0.00 5.128±0.00 14.052±0.00 7.942±3.48 22.380±11.98 10.522±6.41
ENST00000577733 N/A N/A 0.344±0.00 0.422±0.21 0.593±0.32 0.309±0.13 0.310±0.11 0.564±0.34 0.079±0.00 0.223±0.00 N/A 1.247±0.00 N/A N/A
ENST00000579684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.333±0.00 N/A N/A
ENST00000580534 N/A N/A N/A 0.711±0.00 N/A 1.847±0.00 1.325±0.00 4.327±0.00 N/A 1.055±0.79 N/A N/A N/A N/A
ENST00000581484 N/A N/A N/A N/A 0.921±0.00 N/A N/A N/A 1.501±0.00 0.918±0.00 N/A N/A N/A N/A
ENST00000582019 N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A
ENST00000582355 5.799±0.00 6.541±0.00 1.379±0.00 N/A 5.636±5.15 2.484±1.53 N/A 1.992±0.00 0.259±0.00 N/A 3.261±0.00 4.017±2.71 5.758±0.00 15.264±0.00
ENST00000583503 6.453±0.00 N/A 1.383±0.00 N/A N/A 1.532±0.00 N/A N/A N/A N/A N/A 6.310±0.00 8.131±0.00 7.605±0.00
ENST00000583693 N/A 1.321±0.00 N/A N/A 1.472±0.00 N/A N/A N/A N/A 0.862±0.00 N/A 2.030±0.92 N/A N/A
ENST00000583744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.076±0.00 N/A
ENST00000584454 N/A N/A N/A N/A 0.297±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0001 CGP 17:81952507-82017406
CIL_0004VS CIL_0004VS_0001 CGP 17:81976807-82024107

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005829 IEA cytosol
GO:0006886 IEA intracellular protein transport
GO:0008150 ND biological_process
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0012506 IEA vesicle membrane
GO:0019898 IEA extrinsic component of membrane
GO:0042593 IEA glucose homeostasis
GO:0046324 IEA regulation of glucose import
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089727 aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 protein_coding Danio_rerio
ENSDARG00000090657 aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 protein_coding Danio_rerio
ENSMUSG00000025142 Aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 (human) protein_coding Mus_musculus

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