C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alveolar soft part sarcoma chromosome region, candidate 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168097 Aspscr1-022 ENSMUSG00000025142 10090 + 11:120673063-120701564 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000168097
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000168097 18.943±0.00 36.797±2.79 21.067±8.16 133.265±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0002 CGP 11:120653788-120709447
CIL_0004VS CIL_0004VS_0002 CGP 11:120672973-120713738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006886 IDA intracellular protein transport
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0012506 IDA vesicle membrane
GO:0019898 IDA extrinsic component of membrane
GO:0042593 IDA glucose homeostasis
GO:0046324 IDA regulation of glucose import
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306729 ASPSCR1-002 protein_coding Homo_sapiens 0 497
ENST00000306739 ASPSCR1-001 protein_coding Homo_sapiens 0 497
ENST00000344865 ASPSCR1-010 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000577733 ASPSCR1-005 retained_intron Homo_sapiens 0 257
ENST00000578236 ASPSCR1-006 retained_intron Homo_sapiens 0 257
ENST00000579684 ASPSCR1-013 protein_coding Homo_sapiens 0 407
ENST00000580534 ASPSCR1-003 protein_coding Homo_sapiens 0 272
ENST00000581484 ASPSCR1-009 protein_coding Homo_sapiens 0 333
ENST00000581608 ASPSCR1-007 retained_intron Homo_sapiens 0 257
ENST00000581647 ASPSCR1-012 protein_coding Homo_sapiens 0 497
ENST00000582019 ASPSCR1-011 protein_coding Homo_sapiens 9.99967e-42 174
ENST00000582355 ASPSCR1-014 protein_coding Homo_sapiens 0 257
ENST00000583503 ASPSCR1-015 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000584454 ASPSCR1-004 nonsense_mediated_decay Homo_sapiens 0 333

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