C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain and coiled-coil containing 1 like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025184 R3hcc1l 10090 + 19:42518759-42592343 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026188 R3hcc1l-001 42518759-42592343 protein_coding
  ENSMUST00000160107 R3hcc1l-003 42518798-42591010 protein_coding
  ENSMUST00000160893 R3hcc1l-004 42518822-42576100 protein_coding
  ENSMUST00000161422 R3hcc1l-005 42564241-42576665 retained_intron
  ENSMUST00000162238 R3hcc1l-002 42581161-42584771 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026188ENSMUST00000160107ENSMUST00000162238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026188 2.573±0.21 0.750±0.31 4.417±0.06 2.162±0.93 2.470±0.26 1.258±0.40 1.410±0.19 1.977±0.35 2.593±1.27 3.081±0.65 1.816±0.20 2.994±0.81 3.519±1.20 2.673±0.46
ENSMUST00000160107 N/A N/A 5.509±0.00 4.310±0.80 N/A N/A N/A 2.022±0.00 4.430±0.73 N/A 1.481±0.28 12.372±4.12 5.199±1.92 13.410±0.00
ENSMUST00000162238 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A 0.401±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BX CIL_0001BX_0003 CGP 19:42283037-42592343
CIL_00054Z CIL_00054Z_0002 CGP 19:42518759-42612813

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0035145 ISS exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089243 r3hcc1l R3H domain and coiled-coil containing 1-like protein_coding Danio_rerio
ENSG00000166024 R3HCC1L R3H domain and coiled-coil containing 1-like protein_coding Homo_sapiens

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