C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi-specific brefeldin A-resistance factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025224 Gbf1 10090 + 19:46152509-46286510 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026254 Gbf1-001 46152509-46286510 protein_coding
  ENSMUST00000175706 Gbf1-015 46280335-46283485 retained_intron
  ENSMUST00000175747 Gbf1-011 46280180-46283682 nonsense_mediated_decay
  ENSMUST00000175868 Gbf1-003 46152530-46255997 retained_intron
  ENSMUST00000175878 Gbf1-008 46283001-46283940 retained_intron
  ENSMUST00000176046 Gbf1-010 46284563-46285980 retained_intron
  ENSMUST00000176355 Gbf1-007 46152573-46246187 processed_transcript
  ENSMUST00000176422 Gbf1-004 46269718-46273394 retained_intron
  ENSMUST00000176525 Gbf1-009 46282843-46284026 processed_transcript
  ENSMUST00000176574 Gbf1-006 46254067-46259765 protein_coding
  ENSMUST00000176576 Gbf1-012 46279873-46281009 retained_intron
  ENSMUST00000176853 Gbf1-013 46268797-46270711 processed_transcript
  ENSMUST00000176992 Gbf1-002 46246088-46286509 protein_coding
  ENSMUST00000177406 Gbf1-005 46152548-46268186 retained_intron
  ENSMUST00000177512 Gbf1-014 46266112-46269797 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026254ENSMUST00000176992ENSMUST00000177406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026254 10.490±2.38 18.908±0.71 5.437±0.01 6.962±2.67 11.184±3.75 16.696±1.04 4.710±0.22 6.346±1.88 3.694±1.55 11.495±2.16 4.424±1.33 12.153±4.48 6.097±1.54 20.298±0.88
ENSMUST00000176992 8.438±0.28 5.297±1.71 8.317±0.09 11.232±0.99 6.316±1.35 8.752±1.31 4.410±0.56 5.553±1.98 4.134±0.54 6.291±1.32 4.763±0.74 7.256±2.59 10.160±3.24 14.953±0.90
ENSMUST00000177406 N/A N/A N/A N/A 4.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WI CIL_0005WI_0002 CGP 19:46135685-46286510
CIL_0005WJ CIL_0005WJ_0002 CGP 19:46152509-46312090

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005777 IEA peroxisome
GO:0005788 IEA endoplasmic reticulum lumen
GO:0005794 IEA Golgi apparatus
GO:0005795 IEA Golgi stack
GO:0005801 IEA cis-Golgi network
GO:0005802 IBA trans-Golgi network
GO:0016020 IEA membrane
GO:0016192 IBA vesicle-mediated transport
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027016 GBF1 (1 of 2) golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein_coding Danio_rerio
ENSDARG00000088406 GBF1 (2 of 2) golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein_coding Danio_rerio
ENSG00000107862 GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein_coding Homo_sapiens

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