C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107859-ENSG00000107862 CGP 9606 10:102230186-102382899
GeneTranscriptPositionBiotype
ENSG00000107859 (PITX3)
paired-like homeodomain 3 		ENST00000370002 (PITX3-001) 102230186-102241474 protein_coding
ENST00000539804 (PITX3-201) 102230186-102232083 protein_coding
ENSG00000107862 (GBF1)
golgi brefeldin A resistant guanine nucleotide exchange factor 1 		ENST00000369983 (GBF1-001) 102245532-102382899 protein_coding
ENST00000476019 (GBF1-002) 102359099-102361187 processed_transcript
ENSG00000251989 (AL160011.1)
 ENST00000516180 (AL160011.1-201) 102261230-102261306 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005WI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025229-ENSMUSG00000025224 CGP 10090 19:46135685-46286510
GeneTranscriptPositionBiotype
ENSMUSG00000025224 (Gbf1)
golgi-specific brefeldin A-resistance factor 1 		ENSMUST00000026254 (Gbf1-001) 46152509-46286510 protein_coding
ENSMUST00000175706 (Gbf1-015) 46280335-46283485 retained_intron
ENSMUST00000175747 (Gbf1-011) 46280180-46283682 nonsense_mediated_decay
ENSMUST00000175868 (Gbf1-003) 46152530-46255997 retained_intron
ENSMUST00000175878 (Gbf1-008) 46283001-46283940 retained_intron
ENSMUST00000176046 (Gbf1-010) 46284563-46285980 retained_intron
ENSMUST00000176355 (Gbf1-007) 46152573-46246187 processed_transcript
ENSMUST00000176422 (Gbf1-004) 46269718-46273394 retained_intron
ENSMUST00000176525 (Gbf1-009) 46282843-46284026 processed_transcript
ENSMUST00000176574 (Gbf1-006) 46254067-46259765 protein_coding
ENSMUST00000176576 (Gbf1-012) 46279873-46281009 retained_intron
ENSMUST00000176853 (Gbf1-013) 46268797-46270711 processed_transcript
ENSMUST00000176992 (Gbf1-002) 46246088-46286509 protein_coding
ENSMUST00000177406 (Gbf1-005) 46152548-46268186 retained_intron
ENSMUST00000177512 (Gbf1-014) 46266112-46269797 nonsense_mediated_decay
ENSMUSG00000025229 (Pitx3)
paired-like homeodomain transcription factor 3 		ENSMUST00000026259 (Pitx3-001) 46135685-46148326 protein_coding
ENSMUST00000172971 (Pitx3-002) 46137032-46140983 protein_coding
ENSMUST00000172980 (Pitx3-003) 46136495-46137289 retained_intron
ENSMUSG00000086816 (Gm16726)
predicted gene, 16726 		ENSMUST00000130184 (Gm16726-001) 46264539-46267669 processed_transcript
ENSMUSG00000093525 (Gm8974)
predicted gene 8974 		ENSMUST00000175770 (Gm8974-001) 46205380-46205858 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WI_0001ENSG00000107859ENST00000370002ENST00000539804ENSG00000107862ENST00000369983ENST00000476019ENSG00000251989ENST00000516180CIL_0005WI_0002ENSMUSG00000025224ENSMUST00000026254ENSMUST00000175706ENSMUST00000175747ENSMUST00000175868ENSMUST00000175878ENSMUST00000176046ENSMUST00000176355ENSMUST00000176422ENSMUST00000176525ENSMUST00000176574ENSMUST00000176576ENSMUST00000176853ENSMUST00000176992ENSMUST00000177406ENSMUST00000177512ENSMUSG00000025229ENSMUST00000026259ENSMUST00000172971ENSMUST00000172980ENSMUSG00000086816ENSMUST00000130184ENSMUSG00000093525ENSMUST00000175770
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WI_0001ENSG00000107859ENST00000370002ENST00000539804ENSG00000107862ENST00000369983ENSG00000251989ENST00000516180CIL_0005WI_0002ENSMUSG00000025224ENSMUST00000026254ENSMUST00000176992ENSMUST00000177406ENSMUSG00000025229ENSMUST00000026259ENSMUST00000172971ENSMUST00000172980ENSMUSG00000086816ENSMUST00000130184ENSMUSG00000093525ENSMUST00000175770
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107859 ENST00000370002 N/A N/A N/A N/A N/A N/A 0.517±0.00 N/A N/A 0.289±0.00 9.388±0.00 N/A N/A 0.244±0.00
ENST00000539804 0.160±0.00 N/A N/A N/A 0.317±0.00 N/A 1.203±0.00 N/A N/A N/A 1.690±0.00 N/A 0.095±0.00 0.368±0.18
ENSG00000107862 ENST00000369983 11.585±0.00 5.756±0.00 1.887±0.00 7.910±3.50 6.101±3.23 2.875±1.00 13.302±0.00 14.906±0.00 4.364±2.36 3.557±2.80 18.255±13.19 9.394±5.28 8.373±4.19 20.376±0.33
ENST00000476019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251989 ENST00000516180 N/A N/A N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025224 ENSMUST00000026254 10.490±2.38 18.908±0.71 5.437±0.01 6.962±2.67 11.184±3.75 16.696±1.04 4.710±0.22 6.346±1.88 3.694±1.55 11.495±2.16 4.424±1.33 12.153±4.48 6.097±1.54 20.298±0.88
ENSMUST00000175706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176992 8.438±0.28 5.297±1.71 8.317±0.09 11.232±0.99 6.316±1.35 8.752±1.31 4.410±0.56 5.553±1.98 4.134±0.54 6.291±1.32 4.763±0.74 7.256±2.59 10.160±3.24 14.953±0.90
ENSMUST00000177406 N/A N/A N/A N/A 4.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025229 ENSMUST00000026259 0.195±0.13 0.062±0.03 0.082±0.00 0.663±0.05 0.341±0.41 0.029±0.01 0.163±0.04 0.030±0.02 0.049±0.05 0.133±0.04 1.598±0.54 0.054±0.02 0.077±0.07 0.321±0.11
ENSMUST00000172971 N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A N/A 0.543±0.00 N/A N/A N/A 0.291±0.00
ENSMUST00000172980 N/A N/A 0.060±0.00 0.390±0.00 N/A 0.162±0.10 N/A N/A 0.168±0.00 N/A N/A N/A N/A 0.425±0.00
ENSMUSG00000086816 ENSMUST00000130184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.635±0.00
ENSMUSG00000093525 ENSMUST00000175770 0.080±0.00 0.242±0.01 0.167±0.02 0.317±0.16 0.229±0.19 0.357±0.17 0.070±0.00 0.075±0.01 0.175±0.14 0.213±0.02 N/A 0.365±0.20 0.234±0.00 0.231±0.01

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