C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger homeodomain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176383 Zfhx4-001 ENSMUSG00000025255 10090 + 3:5241672-5415857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176383
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176383 0.155±0.05 0.583±0.27 8.144±6.81 0.707±0.15 0.271±0.03 0.076±0.00 0.062±0.02 0.340±0.23 0.150±0.07 0.404±0.16 0.647±0.31 0.017±0.01 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008DA CIL_0008DA_0002 VISTA 3:4923534-5526222
CIL_0008IW CIL_0008IW_0002 VISTA 3:5029674-5630756
CIL_0008U7 CIL_0008U7_0002 VISTA 3:5087050-5689713
CIL_0002OE CIL_0002OE_0002 CGP 3:5218526-5576239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112256 zfhx4-201 protein_coding Danio_rerio 0 1327
ENSDART00000135846 zfhx4-001 protein_coding Danio_rerio 0 1327
ENSDART00000113668 ZFHX3 (2 of 2)-201 protein_coding Danio_rerio 1e-21 111
ENSDART00000148008 ZFHX3 (2 of 2)-002 protein_coding Danio_rerio 1e-21 111
ENST00000268489 ZFHX3-001 protein_coding Homo_sapiens 0 329
ENST00000397992 ZFHX3-002 protein_coding Homo_sapiens 0 329
ENST00000458716 ZFHX4-003 retained_intron Homo_sapiens 0 4364
ENST00000517585 ZFHX4-008 protein_coding Homo_sapiens 0 817
ENST00000518282 ZFHX4-005 protein_coding Homo_sapiens 0 15310
ENST00000520307 ZFHX4-007 protein_coding Homo_sapiens 0 817
ENST00000521891 ZFHX4-002 protein_coding Homo_sapiens 0 13610
ENST00000523625 ZFHX4-011 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000523809 ZFHX4-009 protein_coding Homo_sapiens 0 737
ENST00000523885 ZFHX4-006 protein_coding Homo_sapiens 0 586

Loading