C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger homeodomain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026284 Zfhx4-201 ENSMUSG00000025255 10090 + 3:5218554-5415855 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000026284
Transcript ID Adipose Adrenal Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000026284 0.121±0.00 0.524±0.14 0.140±0.06 1.022±0.37 0.089±0.00 0.119±0.04 0.151±0.00 0.592±0.12 0.051±0.00 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008DA CIL_0008DA_0002 VISTA 3:4923534-5526222
CIL_0008IW CIL_0008IW_0002 VISTA 3:5029674-5630756
CIL_0008U7 CIL_0008U7_0002 VISTA 3:5087050-5689713
CIL_0002OE CIL_0002OE_0002 CGP 3:5218526-5576239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112256 zfhx4-201 protein_coding Danio_rerio 0 1327
ENSDART00000135846 zfhx4-001 protein_coding Danio_rerio 0 1327
ENSDART00000113668 ZFHX3 (2 of 2)-201 protein_coding Danio_rerio 1e-21 111
ENSDART00000148008 ZFHX3 (2 of 2)-002 protein_coding Danio_rerio 1e-21 111
ENST00000268489 ZFHX3-001 protein_coding Homo_sapiens 0 329
ENST00000397992 ZFHX3-002 protein_coding Homo_sapiens 0 329
ENST00000458716 ZFHX4-003 retained_intron Homo_sapiens 0 4933
ENST00000517585 ZFHX4-008 protein_coding Homo_sapiens 0 821
ENST00000517683 ZFHX4-001 processed_transcript Homo_sapiens 0 625
ENST00000518282 ZFHX4-005 protein_coding Homo_sapiens 0 15310
ENST00000520307 ZFHX4-007 protein_coding Homo_sapiens 0 821
ENST00000521891 ZFHX4-002 protein_coding Homo_sapiens 0 13600
ENST00000523625 ZFHX4-011 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000523809 ZFHX4-009 protein_coding Homo_sapiens 0 743
ENST00000523885 ZFHX4-006 protein_coding Homo_sapiens 0 590

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