C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2310003H01 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025384 2310003H01Rik 10090 - 11:120369055-120378764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026448 2310003H01Rik-001 120369562-120378764 protein_coding
  ENSMUST00000129203 2310003H01Rik-008 120369881-120370888 retained_intron
  ENSMUST00000134771 2310003H01Rik-007 120372971-120374167 processed_transcript
  ENSMUST00000135635 2310003H01Rik-006 120369055-120378735 retained_intron
  ENSMUST00000148520 2310003H01Rik-002 120376170-120378709 processed_transcript
  ENSMUST00000152346 2310003H01Rik-004 120377323-120378735 processed_transcript
  ENSMUST00000153015 2310003H01Rik-005 120376986-120378474 processed_transcript
  ENSMUST00000154826 2310003H01Rik-003 120373026-120378736 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026448ENSMUST00000135635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026448 11.175±3.80 40.280±2.21 7.618±0.34 25.583±15.84 12.725±5.45 16.577±2.39 7.073±0.37 9.460±1.25 3.717±0.64 15.675±1.19 4.117±0.82 21.819±10.46 3.992±0.62 16.748±6.67
ENSMUST00000135635 2.524±0.00 N/A 1.227±0.09 3.192±1.81 2.458±0.01 N/A 0.918±0.05 1.322±0.26 0.617±0.15 N/A 0.964±0.36 2.764±1.34 1.029±0.52 3.580±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BP CIL_0003BP_0002 CGP 11:120361534-120378764
CIL_0003BK CIL_0003BK_0002 CGP 11:120369055-120437708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0008150 ND biological_process
GO:0043240 IEA Fanconi anaemia nuclear complex
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079457 C12H17orf70 chromosome 17 open reading frame 70 protein_coding Danio_rerio
ENSG00000185504 C17orf70 chromosome 17 open reading frame 70 protein_coding Homo_sapiens

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