C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2310003H01 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026448 2310003H01Rik-001 ENSMUSG00000025384 10090 - 11:120369562-120378764 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026448 11.175±3.80 40.280±2.21 7.618±0.34 25.583±15.84 12.725±5.45 16.577±2.39 7.073±0.37 9.460±1.25 3.717±0.64 15.675±1.19 4.117±0.82 21.819±10.46 3.992±0.62 16.748±6.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BP CIL_0003BP_0002 CGP 11:120361534-120378764
CIL_0003BK CIL_0003BK_0002 CGP 11:120369055-120437708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0008150 ND biological_process
GO:0043240 IEA Fanconi anaemia nuclear complex
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327787 C17orf70-001 protein_coding Homo_sapiens 0 1783
ENST00000425898 C17orf70-004 protein_coding Homo_sapiens 0 817
ENST00000443656 C17orf70-002 nonsense_mediated_decay Homo_sapiens 0 1583

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