C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025487 Psmd13 10090 + 7:140881968-140898643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026560 Psmd13-001 140881968-140898642 protein_coding
  ENSMUST00000124736 Psmd13-004 140882438-140886863 processed_transcript
  ENSMUST00000125668 Psmd13-008 140890389-140897840 retained_intron
  ENSMUST00000129683 Psmd13-005 140882452-140889719 processed_transcript
  ENSMUST00000130462 Psmd13-009 140889400-140898395 protein_coding
  ENSMUST00000140411 Psmd13-003 140882429-140887265 processed_transcript
  ENSMUST00000146875 Psmd13-006 140882467-140887178 retained_intron
  ENSMUST00000151644 Psmd13-002 140882414-140897912 retained_intron
  ENSMUST00000153385 Psmd13-007 140883500-140886431 processed_transcript
  ENSMUST00000163610 Psmd13-011 140882472-140898288 protein_coding
  ENSMUST00000164681 Psmd13-013 140882472-140898233 protein_coding
  ENSMUST00000165539 Psmd13-012 140894515-140898643 protein_coding
  ENSMUST00000166889 Psmd13-010 140882472-140898288 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026560ENSMUST00000163610ENSMUST00000165539ENSMUST00000166889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026560 40.044±3.33 25.898±2.43 31.056±0.56 43.714±0.24 25.822±7.54 40.111±6.40 28.171±3.20 36.238±2.26 41.441±13.23 31.029±2.38 32.724±6.18 32.419±7.68 31.141±15.48 41.703±7.23
ENSMUST00000163610 N/A N/A N/A 49.459±0.00 N/A N/A N/A N/A N/A N/A N/A 52.064±0.00 63.903±14.62 33.823±0.00
ENSMUST00000165539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 232.742±0.00
ENSMUST00000166889 N/A N/A N/A N/A 19.668±0.00 N/A N/A N/A 31.615±0.00 N/A 25.375±1.99 30.502±0.97 35.465±11.38 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0002 CGP 7:140856957-140882309
CIL_0006QN CIL_0006QN_0002 CGP 7:140863670-140898643
CIL_0005YV CIL_0005YV_0002 CGP 7:140881968-140900446

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0004175 ISA endopeptidase activity
GO:0005634 IEA nucleus
GO:0005838 IDA proteasome regulatory particle
GO:0006508 ISA proteolysis
GO:0007127 IMP meiosis I
GO:0016020 IEA membrane
GO:0022624 IDA proteasome accessory complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016239 psmd13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 protein_coding Danio_rerio
ENSG00000185627 PSMD13 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 protein_coding Homo_sapiens

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