C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026560 Psmd13-001 ENSMUSG00000025487 10090 + 7:140881968-140898642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026560 40.044±3.33 25.898±2.43 31.056±0.56 43.714±0.24 25.822±7.54 40.111±6.40 28.171±3.20 36.238±2.26 41.441±13.23 31.029±2.38 32.724±6.18 32.419±7.68 31.141±15.48 41.703±7.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0002 CGP 7:140856957-140882309
CIL_0006QN CIL_0006QN_0002 CGP 7:140863670-140898643
CIL_0005YV CIL_0005YV_0002 CGP 7:140881968-140900446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0004175 ISA endopeptidase activity
GO:0005634 IEA nucleus
GO:0005838 IDA proteasome regulatory particle
GO:0006508 ISA proteolysis
GO:0007127 IMP meiosis I
GO:0016020 IEA membrane
GO:0022624 IDA proteasome accessory complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352303 PSMD13-007 protein_coding Homo_sapiens 0 1079
ENST00000382671 PSMD13-002 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000431206 PSMD13-003 protein_coding Homo_sapiens 0 1205
ENST00000525665 PSMD13-004 nonsense_mediated_decay Homo_sapiens 0 1205
ENST00000526783 PSMD13-011 protein_coding Homo_sapiens 0 745
ENST00000527047 PSMD13-005 retained_intron Homo_sapiens 0 540
ENST00000527982 PSMD13-014 retained_intron Homo_sapiens 2e-32 145
ENST00000528906 PSMD13-009 protein_coding Homo_sapiens 0 911
ENST00000529372 PSMD13-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000529679 PSMD13-013 retained_intron Homo_sapiens 0 287
ENST00000532025 PSMD13-012 processed_transcript Homo_sapiens 0 394
ENST00000532097 PSMD13-001 protein_coding Homo_sapiens 0 1509
ENST00000533717 PSMD13-010 retained_intron Homo_sapiens 0 414
ENST00000534590 PSMD13-008 retained_intron Homo_sapiens 0 279
ENST00000621534 PSMD13-201 protein_coding Homo_sapiens 0 1424

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