C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166889 Psmd13-010 ENSMUSG00000025487 10090 + 7:140882472-140898288 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverMuscleOvaryPlacentaENSMUST00000166889
Transcript ID Breast Liver Muscle Ovary Placenta
ENSMUST00000166889 19.668±0.00 31.615±0.00 25.375±1.99 30.502±0.97 35.465±11.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0002 CGP 7:140856957-140882309
CIL_0006QN CIL_0006QN_0002 CGP 7:140863670-140898643
CIL_0005YV CIL_0005YV_0002 CGP 7:140881968-140900446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 ISA endopeptidase activity
GO:0005838 IDA proteasome regulatory particle
GO:0006508 ISA proteolysis
GO:0007127 IMP meiosis I

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000352303 PSMD13-007 protein_coding Homo_sapiens 0 809
ENST00000382671 PSMD13-002 nonsense_mediated_decay Homo_sapiens 0 1415
ENST00000431206 PSMD13-003 protein_coding Homo_sapiens 0 1197
ENST00000525665 PSMD13-004 nonsense_mediated_decay Homo_sapiens 0 1197
ENST00000526783 PSMD13-011 protein_coding Homo_sapiens 0 745
ENST00000527047 PSMD13-005 retained_intron Homo_sapiens 0 496
ENST00000527982 PSMD13-014 retained_intron Homo_sapiens 1e-30 139
ENST00000528906 PSMD13-009 protein_coding Homo_sapiens 0 911
ENST00000529372 PSMD13-006 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000529679 PSMD13-013 retained_intron Homo_sapiens 0 281
ENST00000532025 PSMD13-012 processed_transcript Homo_sapiens 0 388
ENST00000532097 PSMD13-001 protein_coding Homo_sapiens 0 1197
ENST00000533717 PSMD13-010 retained_intron Homo_sapiens 0 414
ENST00000534590 PSMD13-008 retained_intron Homo_sapiens 0 222
ENST00000621534 PSMD13-201 protein_coding Homo_sapiens 0 1149

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