C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylserine synthase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025495 Ptdss2 10090 + 7:141122382-141157021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026568 Ptdss2-001 141131286-141157021 protein_coding
  ENSMUST00000172479 Ptdss2-009 141130278-141152823 nonsense_mediated_decay
  ENSMUST00000172787 Ptdss2-003 141130256-141152991 protein_coding
  ENSMUST00000173572 Ptdss2-007 141132553-141143671 processed_transcript
  ENSMUST00000173721 Ptdss2-008 141131344-141143642 processed_transcript
  ENSMUST00000174058 Ptdss2-004 141131356-141143142 nonsense_mediated_decay
  ENSMUST00000174373 Ptdss2-006 141122382-141154456 nonsense_mediated_decay
  ENSMUST00000174612 Ptdss2-005 141132438-141147113 nonsense_mediated_decay
  ENSMUST00000174706 Ptdss2-002 141131301-141154323 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026568ENSMUST00000174373ENSMUST00000174706
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026568 11.211±1.53 23.714±2.21 7.549±1.30 11.353±3.78 12.021±3.91 14.085±3.75 5.040±1.60 22.129±8.47 15.703±14.55 9.210±3.28 4.338±1.15 20.845±8.75 16.619±6.38 69.433±38.79
ENSMUST00000174373 N/A N/A N/A N/A N/A N/A 4.894±0.00 N/A N/A N/A N/A 5.644±0.00 N/A N/A
ENSMUST00000174706 4.493±0.26 9.930±2.55 2.059±0.44 4.028±0.14 N/A 4.042±0.20 N/A N/A 6.950±2.47 2.225±0.00 0.798±0.00 6.900±2.54 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0002 CGP 7:141101219-141157021
CIL_0003OS CIL_0003OS_0002 CGP 7:141122382-141172851

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003882 IMP CDP-diacylglycerol-serine O-phosphatidyltransferase activity
GO:0005622 IDA intracellular
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063147 ptdss2 phosphatidylserine synthase 2 protein_coding Danio_rerio
ENSG00000174915 PTDSS2 phosphatidylserine synthase 2 protein_coding Homo_sapiens

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