C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylserine synthase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174915 PTDSS2 9606 + 11:448268-491399 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308020 PTDSS2-001 450280-491387 protein_coding
  ENST00000525059 PTDSS2-002 450354-461051 retained_intron
  ENST00000525727 PTDSS2-004 450347-479445 retained_intron
  ENST00000526558 PTDSS2-014 450420-459111 processed_transcript
  ENST00000526878 PTDSS2-003 458674-491399 retained_intron
  ENST00000527325 PTDSS2-007 487239-489730 retained_intron
  ENST00000527479 PTDSS2-012 450451-479090 nonsense_mediated_decay
  ENST00000528617 PTDSS2-011 450327-460879 processed_transcript
  ENST00000530029 PTDSS2-008 489791-490720 retained_intron
  ENST00000530087 PTDSS2-013 473920-480594 processed_transcript
  ENST00000531411 PTDSS2-010 489350-490546 retained_intron
  ENST00000531520 PTDSS2-005 450296-487470 nonsense_mediated_decay
  ENST00000532614 PTDSS2-006 448268-487053 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308020ENST00000525059ENST00000526878ENST00000527325ENST00000528617ENST00000531520ENST00000532614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308020 5.217±0.00 6.357±0.00 1.231±0.00 8.523±0.00 8.226±0.00 6.881±0.00 5.992±5.26 14.493±0.00 2.688±2.38 5.293±4.42 5.554±3.50 9.335±7.71 12.289±3.02 25.572±8.81
ENST00000525059 N/A N/A N/A N/A N/A N/A N/A N/A 0.273±0.00 N/A N/A N/A N/A N/A
ENST00000526878 N/A N/A N/A N/A 0.117±0.00 N/A N/A 0.039±0.00 0.184±0.00 N/A N/A N/A N/A N/A
ENST00000527325 N/A N/A 1.601±0.00 N/A N/A 0.851±0.00 N/A 0.895±0.00 N/A N/A N/A 11.677±0.00 6.388±0.00 43.993±0.00
ENST00000528617 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.245±0.00 N/A N/A N/A N/A
ENST00000531520 N/A N/A N/A N/A N/A 1.007±0.00 1.256±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000532614 N/A N/A N/A N/A 1.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0001 CGP 11:417933-491399
CIL_0003OS CIL_0003OS_0001 CGP 11:448268-507300

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003882 IEA CDP-diacylglycerol-serine O-phosphatidyltransferase activity
GO:0005622 IEA intracellular
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063147 ptdss2 phosphatidylserine synthase 2 protein_coding Danio_rerio
ENSMUSG00000025495 Ptdss2 phosphatidylserine synthase 2 protein_coding Mus_musculus

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