C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: phosphatidylserine synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174373 Ptdss2-006 ENSMUSG00000025495 10090 + 7:141122382-141154456 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartOvaryENSMUST00000174373
Transcript ID Heart Ovary
ENSMUST00000174373 4.894±0.00 5.644±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0002 CGP 7:141101219-141157021
CIL_0003OS CIL_0003OS_0002 CGP 7:141122382-141172851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003882 IMP CDP-diacylglycerol-serine O-phosphatidyltransferase activity
GO:0005622 IDA intracellular
GO:0006659 IMP phosphatidylserine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092023 ptdss2-001 protein_coding Danio_rerio 0 566
ENST00000308020 PTDSS2-001 protein_coding Homo_sapiens 0 1059
ENST00000525727 PTDSS2-004 retained_intron Homo_sapiens 0 342
ENST00000526878 PTDSS2-003 retained_intron Homo_sapiens 0 1062
ENST00000527325 PTDSS2-007 retained_intron Homo_sapiens 0 569
ENST00000527479 PTDSS2-012 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000530087 PTDSS2-013 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000531520 PTDSS2-005 nonsense_mediated_decay Homo_sapiens 0 555

Loading