C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylserine synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026568 Ptdss2-001 ENSMUSG00000025495 10090 + 7:141131286-141157021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026568
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026568 11.211±1.53 23.714±2.21 7.549±1.30 11.353±3.78 12.021±3.91 14.085±3.75 5.040±1.60 22.129±8.47 15.703±14.55 9.210±3.28 4.338±1.15 20.845±8.75 16.619±6.38 69.433±38.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0002 CGP 7:141101219-141157021
CIL_0003OS CIL_0003OS_0002 CGP 7:141122382-141172851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003882 IMP CDP-diacylglycerol-serine O-phosphatidyltransferase activity
GO:0005622 IDA intracellular
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092023 ptdss2-001 protein_coding Danio_rerio 0 758
ENST00000308020 PTDSS2-001 protein_coding Homo_sapiens 0 1652
ENST00000525727 PTDSS2-004 retained_intron Homo_sapiens 0 420
ENST00000526878 PTDSS2-003 retained_intron Homo_sapiens 0 1574
ENST00000527325 PTDSS2-007 retained_intron Homo_sapiens 0 798
ENST00000527479 PTDSS2-012 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000530029 PTDSS2-008 retained_intron Homo_sapiens 0 298
ENST00000530087 PTDSS2-013 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000531411 PTDSS2-010 retained_intron Homo_sapiens 0 658
ENST00000531520 PTDSS2-005 nonsense_mediated_decay Homo_sapiens 0 553

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