C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026658 Tnrc6c-201 ENSMUSG00000025571 10090 + 11:117654289-117763437 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverLungTestisENSMUST00000026658
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Lung Testis
ENSMUST00000026658 1.090±0.00 1.418±0.08 4.737±1.73 3.990±0.60 0.812±0.17 0.772±0.13 2.464±1.07 2.299±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IMP endoderm formation
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006417 IEA regulation of translation
GO:0007492 IMP endoderm development
GO:0031047 IEA gene silencing by RNA
GO:0035162 IMP embryonic hemopoiesis
GO:0048568 IMP embryonic organ development
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060964 IMP regulation of gene silencing by miRNA
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113726 TNRC6C (2 of 3)-201 protein_coding Danio_rerio 0 797
ENSDART00000151634 TNRC6C (2 of 3)-001 protein_coding Danio_rerio 0 797
ENST00000301624 TNRC6C-201 protein_coding Homo_sapiens 0 7391
ENST00000335749 TNRC6C-202 protein_coding Homo_sapiens 0 6348
ENST00000585438 TNRC6C-007 protein_coding Homo_sapiens 0 416
ENST00000587990 TNRC6C-009 retained_intron Homo_sapiens 0 651
ENST00000588061 TNRC6C-002 protein_coding Homo_sapiens 0 7350
ENST00000588549 TNRC6C-004 protein_coding Homo_sapiens 0 621
ENST00000588847 TNRC6C-001 protein_coding Homo_sapiens 0 6307
ENST00000591851 TNRC6C-003 retained_intron Homo_sapiens 0 1386
ENST00000592251 TNRC6C-008 retained_intron Homo_sapiens 0 529
ENST00000592566 TNRC6C-006 retained_intron Homo_sapiens 0 339

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