C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATR interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025646 Atrip 10090 - 9:109057933-109074124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045011 Atrip-001 109059696-109074124 protein_coding
  ENSMUST00000159614 Atrip-005 109060661-109065393 protein_coding
  ENSMUST00000160217 Atrip-003 109057933-109074071 nonsense_mediated_decay
  ENSMUST00000160928 Atrip-002 109057936-109074097 nonsense_mediated_decay
  ENSMUST00000161163 Atrip-007 109059810-109061862 retained_intron
  ENSMUST00000161270 Atrip-006 109067465-109069519 retained_intron
  ENSMUST00000161521 Atrip-004 109059785-109074052 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045011ENSMUST00000160217ENSMUST00000160928ENSMUST00000161163ENSMUST00000161521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045011 3.773±0.70 9.867±0.00 2.200±0.01 3.410±1.13 N/A 4.337±1.06 N/A 2.936±0.58 2.344±0.40 N/A 1.458±0.00 4.470±2.41 1.716±0.71 2.267±1.00
ENSMUST00000160217 2.353±0.01 N/A 0.993±0.05 2.747±0.80 N/A 1.826±0.00 N/A N/A 0.944±0.10 N/A 0.901±0.38 3.429±0.94 0.781±0.43 0.396±0.20
ENSMUST00000160928 3.507±0.66 9.958±0.81 2.052±0.07 2.304±0.07 7.156±0.99 3.971±1.02 2.149±0.91 2.748±0.71 1.753±0.38 5.281±0.59 1.025±0.25 5.179±2.65 0.919±0.06 0.446±0.24
ENSMUST00000161163 N/A N/A N/A N/A N/A 12.114±0.00 N/A N/A N/A N/A N/A 24.742±5.43 N/A N/A
ENSMUST00000161521 N/A N/A N/A 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A 3.090±0.00 2.882±1.09 0.685±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UL CIL_0002UL_0002 CGP 9:109057933-109074124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0015630 IEA microtubule cytoskeleton
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063076 atrip ATR interacting protein protein_coding Danio_rerio
ENSG00000164053 ATRIP ATR interacting protein protein_coding Homo_sapiens

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