C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATR interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045011 Atrip-001 ENSMUSG00000025646 10090 - 9:109059696-109074124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000045011
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000045011 3.773±0.70 9.867±0.00 2.200±0.01 3.410±1.13 4.337±1.06 2.936±0.58 2.344±0.40 1.458±0.00 4.470±2.41 1.716±0.71 2.267±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UL CIL_0002UL_0002 CGP 9:109057933-109074124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0015630 IEA microtubule cytoskeleton
GO:0070530 ISS K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320211 ATRIP-001 protein_coding Homo_sapiens 0 1945
ENST00000346691 ATRIP-002 protein_coding Homo_sapiens 0 1531
ENST00000357105 ATRIP-201 protein_coding Homo_sapiens 0 1688
ENST00000412052 ATRIP-005 protein_coding Homo_sapiens 0 1796
ENST00000421175 ATRIP-007 protein_coding Homo_sapiens 0 579
ENST00000424906 ATRIP-003 nonsense_mediated_decay Homo_sapiens 0 1688
ENST00000436480 ATRIP-202 protein_coding Homo_sapiens 0 1090
ENST00000454733 ATRIP-008 nonsense_mediated_decay Homo_sapiens 0 442

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