C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rab40C, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025730 Rab40c 10090 - 17:25882114-25919727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026826 Rab40c-201 25882114-25919714 protein_coding
  ENSMUST00000164738 Rab40c-006 25885082-25919711 protein_coding
  ENSMUST00000164982 Rab40c-004 25883628-25919506 protein_coding
  ENSMUST00000166146 Rab40c-003 25882114-25919556 nonsense_mediated_decay
  ENSMUST00000166619 Rab40c-002 25882117-25913632 processed_transcript
  ENSMUST00000167018 Rab40c-005 25883639-25919727 protein_coding
  ENSMUST00000167626 Rab40c-001 25882114-25919652 protein_coding
  ENSMUST00000172168 Rab40c-007 25884763-25919690 processed_transcript
  ENSMUST00000179998 Rab40c-202 25882114-25919642 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000026826ENSMUST00000166619ENSMUST00000167626ENSMUST00000179998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026826 N/A N/A 15.286±4.25 7.869±0.00 N/A N/A N/A N/A N/A 3.598±0.36 N/A 13.417±4.00 N/A
ENSMUST00000166619 19.533±3.55 35.484±5.82 N/A 9.510±1.47 21.205±5.63 34.500±4.46 10.003±1.38 10.843±0.82 28.136±1.07 4.298±0.08 27.260±7.48 16.616±9.49 8.187±3.50
ENSMUST00000167626 N/A 22.630±0.00 7.467±0.00 11.478±1.22 N/A N/A N/A N/A N/A N/A N/A 6.703±0.00 5.789±0.87
ENSMUST00000179998 N/A N/A 14.491±0.00 N/A N/A N/A N/A N/A N/A 4.495±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016567 IEA protein ubiquitination
GO:0019003 IEA GDP binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061208 rab40c RAB40c, member RAS oncogene family protein_coding Danio_rerio
ENSG00000197562 RAB40C RAB40C, member RAS oncogene family protein_coding Homo_sapiens

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