C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025782 Taf3 10090 - 2:9914552-10048596 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026888 Taf3-001 9914552-10048596 protein_coding
  ENSMUST00000114906 Taf3-004 9916076-9918834 protein_coding
  ENSMUST00000114907 Taf3-005 9916078-9918408 protein_coding
  ENSMUST00000114909 Taf3-002 9914554-9953657 protein_coding
  ENSMUST00000129720 Taf3-003 9915291-9941751 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026888ENSMUST00000114906ENSMUST00000114907ENSMUST00000114909ENSMUST00000129720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026888 1.960±0.80 3.488±0.23 4.132±0.18 4.104±1.37 1.665±0.64 1.644±0.47 1.260±0.18 2.157±0.19 1.872±0.97 3.328±0.48 1.706±0.30 3.620±1.15 3.043±1.98 4.770±0.31
ENSMUST00000114906 N/A N/A N/A N/A 3.441±0.00 2.894±0.35 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114907 N/A N/A N/A N/A 2.655±0.00 N/A N/A N/A 0.721±0.00 N/A N/A 1.897±0.04 N/A N/A
ENSMUST00000114909 N/A N/A N/A N/A 0.479±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129720 0.667±0.00 N/A N/A N/A 0.801±0.17 0.939±0.32 N/A N/A 0.849±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J5 CIL_0007J5_0002 UCNEbase 2:9433268-9958392
CIL_0000WL CIL_0000WL_0002 CGP 2:9914552-10080510

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002039 IPI p53 binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISA transcription factor TFIID complex
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0051457 IEA maintenance of protein location in nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045513 taf3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto protein_coding Danio_rerio
ENSG00000165632 TAF3 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa protein_coding Homo_sapiens

Loading