C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007J5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
GATA3 UCNEbase 9606 10:7952337-8505078
GeneTranscriptPositionBiotype
ENSG00000107485 (GATA3)
GATA binding protein 3 		ENST00000346208 (GATA3-002) 8054806-8074890 protein_coding
ENST00000379328 (GATA3-001) 8054693-8075198 protein_coding
ENST00000461472 (GATA3-004) 8058399-8074064 processed_transcript
ENST00000481743 (GATA3-003) 8053604-8055553 processed_transcript
ENSG00000165632 (TAF3)
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa 		ENST00000344293 (TAF3-001) 7818504-8016627 protein_coding
ENSG00000197308 (GATA3-AS1)
GATA3 antisense RNA 1 		ENST00000355358 (GATA3-AS1-001) 8050450-8053484 lincRNA
ENST00000420815 (GATA3-AS1-002) 8050476-8052495 lincRNA
ENST00000438755 (GATA3-AS1-003) 8050476-8052495 lincRNA
ENSG00000225053 (PRPF38AP1)
PRP38 domain containing A pseudogene 1 		ENST00000451976 (PRPF38AP1-001) 8161260-8162192 processed_pseudogene
ENSG00000226861 (RP5-1119O21.2)
 ENST00000413941 (RP5-1119O21.2-001) 8298897-8301667 lincRNA
ENSG00000226990 (RP11-543F8.2)
 ENST00000413286 (RP11-543F8.2-001) 8400860-8461863 lincRNA
ENSG00000232170 (LINC00708)
long intergenic non-protein coding RNA 708 		ENST00000428165 (LINC00708-001) 8259331-8268305 lincRNA
ENST00000454056 (LINC00708-002) 8259331-8260804 lincRNA
ENSG00000243350 (GATA3-AS1)
GATA3 antisense RNA 1 		ENST00000417359 (GATA3-AS1-002) 8052242-8053256 lincRNA
ENST00000458727 (GATA3-AS1-001) 8052243-8053449 lincRNA
CIL_0007J5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
GATA3 UCNEbase 10090 2:9433268-9958392
GeneTranscriptPositionBiotype
ENSMUSG00000015619 (Gata3)
GATA binding protein 3 		ENSMUST00000102976 (Gata3-001) 9857078-9878600 protein_coding
ENSMUST00000130615 (Gata3-004) 9874702-9890034 protein_coding
ENSMUST00000142305 (Gata3-008) 9877890-9890002 processed_transcript
ENSMUST00000147533 (Gata3-006) 9877835-9887784 processed_transcript
ENSMUST00000151456 (Gata3-002) 9863183-9873672 processed_transcript
ENSMUST00000153509 (Gata3-003) 9874487-9875399 processed_transcript
ENSMUSG00000025782 (Taf3)
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000026888 (Taf3-001) 9914552-10048596 protein_coding
ENSMUST00000114906 (Taf3-004) 9916076-9918834 protein_coding
ENSMUST00000114907 (Taf3-005) 9916078-9918408 protein_coding
ENSMUST00000114909 (Taf3-002) 9914554-9953657 protein_coding
ENSMUST00000129720 (Taf3-003) 9915291-9941751 processed_transcript
ENSMUSG00000025783 (4930412O13Rik)
RIKEN cDNA 4930412O13 gene 		ENSMUST00000026889 (4930412O13Rik-001) 9881252-9883921 protein_coding
ENSMUST00000114919 (4930412O13Rik-002) 9882636-9883335 protein_coding
ENSMUSG00000075534 (Gm13262)
predicted gene 13262 		ENSMUST00000149014 (Gm13262-001) 9906178-9914678 antisense
ENSMUSG00000079602 (9230102O04Rik)
RIKEN cDNA 9230102O04 gene 		ENSMUST00000114915 (9230102O04Rik-001) 9883042-9883993 protein_coding
ENSMUST00000125091 (9230102O04Rik-002) 9883041-9889540 processed_transcript
ENSMUSG00000079603 (Gm13218)
predicted gene 13218 		ENSMUST00000128180 (Gm13218-001) 9591219-9597843 lincRNA
ENSMUSG00000079604 (Gm13219)
predicted gene 13219 		ENSMUST00000144870 (Gm13219-002) 9352490-9447676 lincRNA
ENSMUST00000152599 (Gm13219-003) 9352431-9410271 lincRNA
ENSMUST00000154223 (Gm13219-001) 9352520-9411632 lincRNA
CIL_0007J5_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
GATA3 UCNEbase 7955 4:23895941-24194175
GeneTranscriptPositionBiotype
ENSDARG00000016526 (gata3)
GATA-binding protein 3 		ENSDART00000025153 (gata3-001) 24141643-24151643 protein_coding
ENSDART00000149971 (gata3-002) 24145608-24147869 retained_intron
ENSDARG00000045513 (taf3)
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto 		ENSDART00000066929 (taf3-001) 24171361-24255591 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J5_0001ENSG00000107485ENST00000346208ENST00000379328ENST00000461472ENST00000481743ENSG00000165632ENST00000344293ENSG00000197308ENST00000355358ENST00000420815ENST00000438755ENSG00000225053ENST00000451976ENSG00000226861ENST00000413941ENSG00000226990ENST00000413286ENSG00000232170ENST00000428165ENST00000454056ENSG00000243350ENST00000417359ENST00000458727CIL_0007J5_0002ENSMUSG00000015619ENSMUST00000102976ENSMUST00000130615ENSMUST00000142305ENSMUST00000147533ENSMUST00000151456ENSMUST00000153509ENSMUSG00000025782ENSMUST00000026888ENSMUST00000114906ENSMUST00000114907ENSMUST00000114909ENSMUST00000129720ENSMUSG00000025783ENSMUST00000026889ENSMUST00000114919ENSMUSG00000075534ENSMUST00000149014ENSMUSG00000079602ENSMUST00000114915ENSMUST00000125091ENSMUSG00000079603ENSMUST00000128180ENSMUSG00000079604ENSMUST00000144870ENSMUST00000152599ENSMUST00000154223CIL_0007J5_0003ENSDARG00000016526ENSDART00000025153ENSDART00000149971ENSDARG00000045513ENSDART00000066929
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J5_0001ENSG00000107485ENST00000346208ENST00000379328ENST00000461472ENST00000481743ENSG00000165632ENST00000344293ENSG00000197308ENST00000355358ENST00000420815ENST00000438755ENSG00000225053ENST00000451976ENSG00000226861ENST00000413941ENSG00000226990ENST00000413286ENSG00000232170ENST00000428165ENSG00000243350ENST00000417359ENST00000458727CIL_0007J5_0002ENSMUSG00000015619ENSMUST00000102976ENSMUST00000130615ENSMUST00000151456ENSMUST00000153509ENSMUSG00000025782ENSMUST00000026888ENSMUST00000114906ENSMUST00000114907ENSMUST00000114909ENSMUST00000129720ENSMUSG00000025783ENSMUST00000026889ENSMUSG00000075534ENSMUST00000149014ENSMUSG00000079602ENSMUST00000114915ENSMUSG00000079603ENSMUST00000128180ENSMUSG00000079604ENSMUST00000144870ENSMUST00000152599ENSMUST00000154223CIL_0007J5_0003ENSDARG00000016526ENSDART00000025153ENSDARG00000045513ENSDART00000066929
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107485 ENST00000346208 1.629±0.00 2.350±0.00 0.697±0.00 0.048±0.00 6.669±6.09 0.105±0.09 0.100±0.06 13.972±0.00 0.745±0.29 2.929±0.00 0.230±0.12 0.142±0.10 26.758±8.38 1.207±1.00
ENST00000379328 0.805±0.00 0.792±0.00 N/A 0.035±0.00 3.993±0.00 N/A 0.297±0.00 8.121±0.00 N/A 0.796±0.00 0.115±0.00 0.128±0.08 20.925±5.73 0.346±0.00
ENST00000461472 N/A N/A N/A 0.045±0.00 N/A N/A 0.396±0.00 N/A N/A 2.550±0.00 0.468±0.00 0.101±0.00 N/A N/A
ENST00000481743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.256±0.00 N/A N/A
ENSG00000165632 ENST00000344293 3.258±0.00 3.403±0.00 0.106±0.00 1.328±1.09 1.582±0.86 2.870±2.18 1.561±1.47 1.517±1.19 0.880±0.10 1.659±0.52 3.183±2.86 2.738±1.61 3.058±1.39 8.281±1.01
ENSG00000197308 ENST00000355358 0.013±0.00 0.044±0.00 0.088±0.00 N/A 0.229±0.00 0.084±0.00 0.026±0.00 N/A 0.232±0.00 N/A N/A N/A 0.349±0.15 0.300±0.00
ENST00000420815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.572±0.12 0.462±0.28
ENST00000438755 0.096±0.00 N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000225053 ENST00000451976 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A
ENSG00000226861 ENST00000413941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.02 N/A
ENSG00000226990 ENST00000413286 0.098±0.00 N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A 0.113±0.04
ENSG00000232170 ENST00000428165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.01
ENST00000454056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243350 ENST00000417359 0.104±0.00 N/A N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A 0.042±0.00 0.252±0.00 1.599±0.00
ENST00000458727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015619 ENSMUST00000102976 0.361±0.19 7.023±0.20 33.508±2.58 4.090±4.66 19.929±14.87 0.360±0.09 0.093±0.03 4.823±1.01 0.173±0.10 3.456±0.25 0.082±0.02 0.387±0.18 9.200±4.90 N/A
ENSMUST00000130615 N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A 0.169±0.05 N/A 0.074±0.00 0.587±0.00 N/A N/A
ENSMUST00000142305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.565±0.00 N/A N/A N/A
ENSMUST00000153509 N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000025782 ENSMUST00000026888 1.960±0.80 3.488±0.23 4.132±0.18 4.104±1.37 1.665±0.64 1.644±0.47 1.260±0.18 2.157±0.19 1.872±0.97 3.328±0.48 1.706±0.30 3.620±1.15 3.043±1.98 4.770±0.31
ENSMUST00000114906 N/A N/A N/A N/A 3.441±0.00 2.894±0.35 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114907 N/A N/A N/A N/A 2.655±0.00 N/A N/A N/A 0.721±0.00 N/A N/A 1.897±0.04 N/A N/A
ENSMUST00000114909 N/A N/A N/A N/A 0.479±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129720 0.667±0.00 N/A N/A N/A 0.801±0.17 0.939±0.32 N/A N/A 0.849±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000025783 ENSMUST00000026889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.339±6.91
ENSMUST00000114919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075534 ENSMUST00000149014 N/A N/A N/A N/A N/A N/A N/A 2.000±0.48 N/A N/A N/A N/A N/A N/A
ENSMUSG00000079602 ENSMUST00000114915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.369±0.00
ENSMUST00000125091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079603 ENSMUST00000128180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A
ENSMUSG00000079604 ENSMUST00000144870 N/A N/A 0.558±0.02 0.021±0.01 0.032±0.00 N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.003±0.00 N/A
ENSMUST00000152599 N/A N/A 2.948±0.55 0.092±0.00 0.551±0.09 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.136±0.12
ENSMUST00000154223 N/A N/A 3.732±0.25 0.064±0.00 0.171±0.08 N/A N/A 0.053±0.02 N/A N/A N/A 0.009±0.00 N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016526 ENSDART00000025153 N/A N/A N/A 13.924±11.81 N/A N/A 3.067±2.71 3.391±2.12 0.180±0.00 N/A 3.377±0.00 N/A N/A N/A
ENSDART00000149971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000045513 ENSDART00000066929 N/A N/A N/A 10.965±6.15 N/A N/A 5.943±3.04 5.915±4.50 0.763±0.00 N/A 5.161±0.00 N/A N/A N/A

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