C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025875 Tspan17 10090 + 13:54789377-54796776 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026993 Tspan17-001 54789377-54796776 protein_coding
  ENSMUST00000099503 Tspan17-009 54789595-54796222 protein_coding
  ENSMUST00000130568 Tspan17-005 54792740-54796165 protein_coding
  ENSMUST00000131692 Tspan17-002 54789403-54796768 protein_coding
  ENSMUST00000139574 Tspan17-004 54795384-54796768 retained_intron
  ENSMUST00000145574 Tspan17-003 54792871-54796775 protein_coding
  ENSMUST00000163796 Tspan17-007 54789463-54796187 protein_coding
  ENSMUST00000163915 Tspan17-006 54789595-54796118 protein_coding
  ENSMUST00000171859 Tspan17-008 54789645-54795148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026993ENSMUST00000099503ENSMUST00000130568ENSMUST00000131692ENSMUST00000139574ENSMUST00000145574ENSMUST00000163796ENSMUST00000171859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026993 16.222±7.90 8.478±1.96 9.742±1.60 2.984±1.04 6.812±2.18 5.469±1.55 1.799±0.42 2.498±0.44 0.392±0.24 12.017±1.55 5.753±0.86 5.075±1.45 1.479±0.90 4.812±2.04
ENSMUST00000099503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.631±1.67 N/A N/A
ENSMUST00000130568 N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.05 N/A 3.276±0.68 N/A 1.934±0.00 N/A
ENSMUST00000131692 7.034±0.00 4.046±0.00 N/A N/A 3.833±0.00 N/A N/A 0.707±0.00 0.127±0.05 N/A 1.698±0.00 N/A 0.291±0.00 N/A
ENSMUST00000139574 N/A N/A N/A 8.619±0.00 N/A N/A N/A 3.337±0.22 0.611±0.12 N/A N/A N/A 3.207±2.27 3.292±0.00
ENSMUST00000145574 14.277±3.29 N/A N/A 4.677±0.00 4.346±0.00 N/A 1.145±0.00 N/A 0.139±0.03 N/A 2.849±0.52 9.947±0.58 0.669±0.00 N/A
ENSMUST00000163796 N/A 9.280±1.51 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171859 N/A N/A N/A 11.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.907±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002NB CIL_0002NB_0002 CGP 13:54783998-54796776
CIL_0002NA CIL_0002NA_0002 CGP 13:54789377-55006018

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053183 TSPAN17 tetraspanin 17 protein_coding Danio_rerio
ENSG00000048140 TSPAN17 tetraspanin 17 protein_coding Homo_sapiens

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