C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026993 Tspan17-001 ENSMUSG00000025875 10090 + 13:54789377-54796776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026993 16.222±7.90 8.478±1.96 9.742±1.60 2.984±1.04 6.812±2.18 5.469±1.55 1.799±0.42 2.498±0.44 0.392±0.24 12.017±1.55 5.753±0.86 5.075±1.45 1.479±0.90 4.812±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002NB CIL_0002NB_0002 CGP 13:54783998-54796776
CIL_0002NA CIL_0002NA_0002 CGP 13:54789377-55006018

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298564 TSPAN17-009 protein_coding Homo_sapiens 0 272
ENST00000310032 TSPAN17-001 protein_coding Homo_sapiens 0 1195
ENST00000503030 TSPAN17-005 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000503045 TSPAN17-008 protein_coding Homo_sapiens 0 545
ENST00000504168 TSPAN17-007 protein_coding Homo_sapiens 0 625
ENST00000507471 TSPAN17-006 protein_coding Homo_sapiens 0 726
ENST00000508164 TSPAN17-003 protein_coding Homo_sapiens 0 1223
ENST00000514705 TSPAN17-004 retained_intron Homo_sapiens 0 749
ENST00000515708 TSPAN17-002 protein_coding Homo_sapiens 0 1109

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