C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139574 Tspan17-004 ENSMUSG00000025875 10090 + 13:54795384-54796768 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverPlacentaTestisENSMUST00000139574
Transcript ID Brain Kidney Liver Placenta Testis
ENSMUST00000139574 8.619±0.00 3.337±0.22 0.611±0.12 3.207±2.27 3.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002NB CIL_0002NB_0002 CGP 13:54783998-54796776
CIL_0002NA CIL_0002NA_0002 CGP 13:54789377-55006018

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298564 TSPAN17-009 protein_coding Homo_sapiens 3e-17 95
ENST00000310032 TSPAN17-001 protein_coding Homo_sapiens 0 265
ENST00000503030 TSPAN17-005 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000503045 TSPAN17-008 protein_coding Homo_sapiens 0 265
ENST00000504168 TSPAN17-007 protein_coding Homo_sapiens 0 300
ENST00000507471 TSPAN17-006 protein_coding Homo_sapiens 0 302
ENST00000508164 TSPAN17-003 protein_coding Homo_sapiens 0 307
ENST00000514705 TSPAN17-004 retained_intron Homo_sapiens 0 307

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