C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048140 TSPAN17 9606 + 5:176647387-176659054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298564 TSPAN17-009 176647467-176659054 protein_coding
  ENST00000310032 TSPAN17-001 176647387-176659020 protein_coding
  ENST00000503030 TSPAN17-005 176647502-176657618 nonsense_mediated_decay
  ENST00000503045 TSPAN17-008 176647561-176657732 protein_coding
  ENST00000504168 TSPAN17-007 176647505-176656956 protein_coding
  ENST00000507471 TSPAN17-006 176647620-176657056 protein_coding
  ENST00000508164 TSPAN17-003 176647502-176659051 protein_coding
  ENST00000514705 TSPAN17-004 176647497-176659053 retained_intron
  ENST00000515708 TSPAN17-002 176647568-176659053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298564ENST00000310032ENST00000504168ENST00000507471ENST00000508164ENST00000514705ENST00000515708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298564 1.002±0.00 N/A N/A 1.496±0.00 N/A 2.479±0.00 N/A N/A N/A 2.917±0.00 N/A 3.557±0.00 1.186±0.33 2.578±0.00
ENST00000310032 N/A N/A 0.235±0.00 N/A N/A N/A 0.233±0.00 N/A N/A 3.217±0.00 N/A N/A N/A N/A
ENST00000504168 N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A N/A N/A N/A N/A
ENST00000507471 N/A N/A N/A N/A N/A N/A N/A 2.044±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508164 4.901±0.00 3.245±0.00 0.147±0.00 2.846±2.17 3.370±2.49 2.698±1.32 2.807±0.00 4.486±3.65 1.769±0.00 1.670±1.11 5.317±0.00 3.323±2.22 7.378±3.42 6.196±1.39
ENST00000514705 N/A N/A 0.324±0.00 0.479±0.00 N/A N/A 0.086±0.00 0.268±0.00 N/A N/A 0.282±0.00 0.944±0.08 N/A N/A
ENST00000515708 1.878±0.00 2.943±0.00 N/A 1.580±0.00 N/A N/A 1.659±0.80 N/A 1.181±0.13 1.852±0.80 2.924±0.00 3.580±1.44 1.488±0.01 2.444±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0004842 NAS ubiquitin-protein transferase activity
GO:0016021 IEA integral component of membrane
GO:0016567 NAS protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0072594 IDA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053183 TSPAN17 tetraspanin 17 protein_coding Danio_rerio
ENSMUSG00000025875 Tspan17 tetraspanin 17 protein_coding Mus_musculus

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