C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein phosphatase 1, regulatory subunit 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025916 Ppp1r42 10090 - 1:9968624-10009136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027049 Ppp1r42-001 9968624-10009136 protein_coding
  ENSMUST00000124874 Ppp1r42-006 9968624-10003453 nonsense_mediated_decay
  ENSMUST00000130102 Ppp1r42-002 9968825-10009130 nonsense_mediated_decay
  ENSMUST00000147000 Ppp1r42-005 9968624-9985692 protein_coding
  ENSMUST00000155163 Ppp1r42-003 9995063-10009130 retained_intron
  ENSMUST00000176398 Ppp1r42-007 9978816-10009130 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027049ENSMUST00000124874ENSMUST00000130102ENSMUST00000147000ENSMUST00000155163ENSMUST00000176398
Transcript ID Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027049 N/A 0.067±0.04 0.034±0.00 0.048±0.00 0.161±0.00 0.105±0.01 0.206±0.12 0.020±0.00 2.764±0.82
ENSMUST00000124874 0.058±0.00 N/A N/A 0.095±0.03 N/A 0.031±0.01 0.440±0.00 N/A 3.216±0.00
ENSMUST00000130102 N/A 0.028±0.00 N/A N/A N/A N/A 0.063±0.00 N/A N/A
ENSMUST00000147000 N/A N/A 0.133±0.00 0.347±0.25 N/A 0.083±0.03 N/A 0.047±0.00 N/A
ENSMUST00000155163 N/A 0.076±0.00 N/A N/A N/A 0.079±0.00 N/A N/A 13.102±2.80
ENSMUST00000176398 N/A 0.142±0.09 N/A 0.026±0.00 N/A 0.114±0.05 N/A 0.057±0.00 19.580±15.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BD CIL_0003BD_0002 CGP 1:9960163-10009136
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002177 IDA manchette
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0010921 IDA regulation of phosphatase activity
GO:0015630 IDA microtubule cytoskeleton
GO:0015631 IDA tubulin binding
GO:0045502 IDA dynein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057632 ppp1r42 protein phosphatase 1, regulatory subunit 42 protein_coding Danio_rerio
ENSG00000178125 PPP1R42 protein phosphatase 1, regulatory subunit 42 protein_coding Homo_sapiens

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