C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, regulatory subunit 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027049 Ppp1r42-001 ENSMUSG00000025916 10090 - 1:9968624-10009136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027049
Transcript ID Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027049 0.067±0.04 0.034±0.00 0.048±0.00 0.161±0.00 0.105±0.01 0.206±0.12 0.020±0.00 2.764±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BD CIL_0003BD_0002 CGP 1:9960163-10009136
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002177 IDA manchette
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0010921 IDA regulation of phosphatase activity
GO:0015630 IDA microtubule cytoskeleton
GO:0015631 IDA tubulin binding
GO:0045502 IDA dynein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324682 PPP1R42-001 protein_coding Homo_sapiens 0 856
ENST00000517834 PPP1R42-013 processed_transcript Homo_sapiens 0 191
ENST00000518588 PPP1R42-007 processed_transcript Homo_sapiens 0 503
ENST00000519919 PPP1R42-004 processed_transcript Homo_sapiens 0 377
ENST00000520633 PPP1R42-003 processed_transcript Homo_sapiens 0 292
ENST00000521040 PPP1R42-005 processed_transcript Homo_sapiens 0 436
ENST00000521998 PPP1R42-010 processed_transcript Homo_sapiens 5.99994e-41 171
ENST00000522331 PPP1R42-009 processed_transcript Homo_sapiens 0 446
ENST00000522909 PPP1R42-011 protein_coding Homo_sapiens 0 1297

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