C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: translocating chain-associating membrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025935 Tram1 10090 - 1:13564698-13589910 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027068 Tram1-001 13564698-13589910 protein_coding
  ENSMUST00000185447 Tram1-004 13576144-13579798 retained_intron
  ENSMUST00000188377 Tram1-003 13578118-13589875 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027068ENSMUST00000188377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027068 17.214±3.90 10.753±1.30 23.400±13.77 7.172±4.00 20.008±2.00 15.927±2.27 8.560±0.13 23.837±1.65 34.992±4.36 29.471±3.54 3.714±0.51 16.391±6.49 32.407±23.64 39.628±20.35
ENSMUST00000188377 N/A 31.372±15.18 N/A N/A 16.973±3.57 14.073±5.40 N/A N/A N/A 17.305±0.00 N/A 26.169±8.11 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BN CIL_0003BN_0002 CGP 1:13139105-13589910
CIL_0001DD CIL_0001DD_0002 CGP 1:13564698-13660546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019137 tram1 translocating chain-associating membrane protein 1 protein_coding Danio_rerio
ENSG00000067167 TRAM1 translocation associated membrane protein 1 protein_coding Homo_sapiens

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