C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001DD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000067167-ENSG00000147592 CGP 9606 8:70573442-70669174
GeneTranscriptPositionBiotype
ENSG00000067167 (TRAM1)
translocation associated membrane protein 1 		ENST00000262213 (TRAM1-001) 70573442-70608369 protein_coding
ENST00000518678 (TRAM1-004) 70597891-70608387 protein_coding
ENST00000520700 (TRAM1-005) 70594501-70608352 processed_transcript
ENST00000521049 (TRAM1-003) 70583706-70608339 processed_transcript
ENST00000521425 (TRAM1-002) 70573442-70607778 protein_coding
ENSG00000147592 (LACTB2)
lactamase, beta 2 		ENST00000276590 (LACTB2-001) 70637256-70669157 protein_coding
ENST00000517601 (LACTB2-004) 70638551-70644252 processed_transcript
ENST00000522447 (LACTB2-002) 70635318-70669174 protein_coding
ENST00000522558 (LACTB2-003) 70640573-70644128 retained_intron
ENSG00000243532 (RN7SL19P)
RNA, 7SL, cytoplasmic 19, pseudogene 		ENST00000462522 (RN7SL19P-201) 70654578-70654883 misc_RNA
ENSG00000246366 (RP11-382J12.1)
 ENST00000499227 (RP11-382J12.1-001) 70608577-70663279 antisense
ENST00000518152 (RP11-382J12.1-004) 70608682-70646490 antisense
ENST00000518553 (RP11-382J12.1-005) 70608604-70653981 antisense
ENST00000519167 (RP11-382J12.1-003) 70613935-70646709 antisense
ENST00000519358 (RP11-382J12.1-002) 70608592-70632796 antisense
CIL_0001DD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025935-ENSMUSG00000025937 CGP 10090 1:13564698-13660546
GeneTranscriptPositionBiotype
ENSMUSG00000025935 (Tram1)
translocating chain-associating membrane protein 1 		ENSMUST00000027068 (Tram1-001) 13564698-13589910 protein_coding
ENSMUST00000185447 (Tram1-004) 13576144-13579798 retained_intron
ENSMUST00000188377 (Tram1-003) 13578118-13589875 nonsense_mediated_decay
ENSMUSG00000025937 (Lactb2)
lactamase, beta 2 		ENSMUST00000027071 (Lactb2-001) 13623330-13660546 protein_coding
ENSMUST00000156222 (Lactb2-002) 13629995-13638411 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001DD_0001ENSG00000067167ENST00000262213ENST00000518678ENST00000520700ENST00000521049ENST00000521425ENSG00000147592ENST00000276590ENST00000517601ENST00000522447ENST00000522558ENSG00000243532ENST00000462522ENSG00000246366ENST00000499227ENST00000518152ENST00000518553ENST00000519167ENST00000519358CIL_0001DD_0002ENSMUSG00000025935ENSMUST00000027068ENSMUST00000185447ENSMUST00000188377ENSMUSG00000025937ENSMUST00000027071ENSMUST00000156222
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001DD_0001ENSG00000067167ENST00000262213ENST00000521049ENST00000521425ENSG00000147592ENST00000276590ENST00000522447ENSG00000243532ENST00000462522ENSG00000246366ENST00000499227ENST00000518152ENST00000519167CIL_0001DD_0002ENSMUSG00000025935ENSMUST00000027068ENSMUST00000188377ENSMUSG00000025937ENSMUST00000027071ENSMUST00000156222
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067167 ENST00000262213 36.901±0.00 31.630±0.00 7.930±0.00 8.190±4.70 20.838±10.21 22.749±12.44 8.840±5.56 39.948±19.87 32.584±24.20 38.622±22.28 6.834±0.00 21.589±10.09 29.849±10.60 18.444±16.43
ENST00000518678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.586±0.00 N/A 11.019±0.00
ENST00000521425 N/A N/A N/A N/A 2.043±0.00 1.204±0.00 N/A N/A N/A N/A N/A N/A N/A 5.253±0.00
ENSG00000147592 ENST00000276590 0.831±0.00 1.090±0.00 N/A 1.452±0.30 1.995±0.01 1.436±0.20 2.118±0.87 6.886±2.10 3.646±1.79 1.191±0.75 0.786±0.26 1.834±0.75 0.736±0.25 3.425±0.00
ENST00000517601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522447 2.855±0.00 3.256±0.00 7.498±0.00 2.672±0.50 3.391±2.30 1.792±0.31 4.711±3.12 12.554±8.06 9.260±7.82 1.420±0.42 2.269±1.41 5.654±3.51 2.984±0.42 27.838±6.11
ENST00000522558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243532 ENST00000462522 N/A 0.234±0.00 N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000246366 ENST00000499227 N/A N/A N/A N/A 0.613±0.00 1.185±0.00 N/A 1.655±0.00 0.417±0.00 N/A 0.389±0.00 N/A N/A N/A
ENST00000518152 1.071±0.00 3.095±0.00 N/A 4.030±0.00 2.317±0.00 N/A 1.828±0.00 N/A N/A 0.846±0.00 N/A N/A 0.784±0.00 N/A
ENST00000518553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519167 N/A N/A N/A N/A 1.898±0.00 N/A N/A N/A 1.116±0.00 1.389±0.00 0.530±0.00 N/A N/A N/A
ENST00000519358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025935 ENSMUST00000027068 17.214±3.90 10.753±1.30 23.400±13.77 7.172±4.00 20.008±2.00 15.927±2.27 8.560±0.13 23.837±1.65 34.992±4.36 29.471±3.54 3.714±0.51 16.391±6.49 32.407±23.64 39.628±20.35
ENSMUST00000185447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188377 N/A 31.372±15.18 N/A N/A 16.973±3.57 14.073±5.40 N/A N/A N/A 17.305±0.00 N/A 26.169±8.11 N/A N/A
ENSMUSG00000025937 ENSMUST00000027071 11.830±3.11 16.503±3.52 6.063±0.71 1.017±0.49 14.281±4.43 10.905±3.38 4.333±1.15 117.264±11.28 56.826±45.16 12.117±1.79 2.442±1.03 9.658±5.12 5.878±3.23 0.429±0.14
ENSMUST00000156222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.936±2.60 N/A

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