C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translocating chain-associating membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027068 Tram1-001 ENSMUSG00000025935 10090 - 1:13564698-13589910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027068 17.214±3.90 10.753±1.30 23.400±13.77 7.172±4.00 20.008±2.00 15.927±2.27 8.560±0.13 23.837±1.65 34.992±4.36 29.471±3.54 3.714±0.51 16.391±6.49 32.407±23.64 39.628±20.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BN CIL_0003BN_0002 CGP 1:13139105-13589910
CIL_0001DD CIL_0001DD_0002 CGP 1:13564698-13660546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262213 TRAM1-001 protein_coding Homo_sapiens 0 1664
ENST00000310754 TRAM1L1-001 protein_coding Homo_sapiens 0 691
ENST00000518678 TRAM1-004 protein_coding Homo_sapiens 0 459
ENST00000520700 TRAM1-005 processed_transcript Homo_sapiens 0 566
ENST00000521049 TRAM1-003 processed_transcript Homo_sapiens 0 355
ENST00000521425 TRAM1-002 protein_coding Homo_sapiens 0 1325

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