C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140396-ENSG00000067167 CGP 9606 8:70109762-70608387
GeneTranscriptPositionBiotype
ENSG00000067167 (TRAM1)
translocation associated membrane protein 1 		ENST00000262213 (TRAM1-001) 70573442-70608369 protein_coding
ENST00000518678 (TRAM1-004) 70597891-70608387 protein_coding
ENST00000520700 (TRAM1-005) 70594501-70608352 processed_transcript
ENST00000521049 (TRAM1-003) 70583706-70608339 processed_transcript
ENST00000521425 (TRAM1-002) 70573442-70607778 protein_coding
ENSG00000140396 (NCOA2)
nuclear receptor coactivator 2 		ENST00000452400 (NCOA2-001) 70109762-70403805 protein_coding
ENST00000518287 (NCOA2-002) 70112070-70402079 nonsense_mediated_decay
ENST00000518363 (NCOA2-005) 70113569-70148460 protein_coding
ENST00000519724 (NCOA2-004) 70216696-70245375 protein_coding
ENST00000520416 (NCOA2-003) 70216721-70402587 protein_coding
ENST00000521239 (NCOA2-007) 70126609-70128747 retained_intron
ENST00000522054 (NCOA2-006) 70137973-70141242 retained_intron
ENST00000524223 (NCOA2-008) 70155971-70157146 processed_transcript
ENSG00000207036 (RNY3P14)
RNA, Ro-associated Y3 pseudogene 14 		ENST00000384309 (RNY3P14-201) 70357347-70357448 misc_RNA
ENSG00000213003 (BTF3P12)
basic transcription factor 3 pseudogene 12 		ENST00000519620 (BTF3P12-001) 70273369-70273837 processed_pseudogene
ENSG00000241105 (RP11-333A23.2)
 ENST00000473114 (RP11-333A23.2-001) 70506251-70506818 processed_pseudogene
ENSG00000241204 (RP11-333A23.1)
 ENST00000465359 (RP11-333A23.1-001) 70424125-70424576 processed_pseudogene
ENSG00000253143 (RP11-333A23.3)
 ENST00000521051 (RP11-333A23.3-001) 70471112-70480623 lincRNA
ENSG00000253967 (RP11-333A23.4)
 ENST00000520259 (RP11-333A23.4-001) 70471134-70485687 lincRNA
CIL_0003BN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005886-ENSMUSG00000025935 CGP 10090 1:13139105-13589910
GeneTranscriptPositionBiotype
ENSMUSG00000005886 (Ncoa2)
nuclear receptor coactivator 2 		ENSMUST00000006037 (Ncoa2-002) 13142475-13374083 protein_coding
ENSMUST00000068304 (Ncoa2-201) 13139159-13374083 protein_coding
ENSMUST00000081713 (Ncoa2-001) 13139105-13372439 protein_coding
ENSMUST00000124088 (Ncoa2-005) 13184606-13374029 retained_intron
ENSMUST00000133232 (Ncoa2-008) 13148429-13151018 retained_intron
ENSMUST00000139970 (Ncoa2-006) 13182284-13372429 retained_intron
ENSMUST00000143603 (Ncoa2-004) 13165925-13374029 retained_intron
ENSMUST00000145280 (Ncoa2-007) 13190106-13299722 protein_coding
ENSMUST00000146784 (Ncoa2-009) 13146599-13148507 retained_intron
ENSMUST00000147927 (Ncoa2-003) 13164501-13374083 retained_intron
ENSMUST00000185275 (Ncoa2-010) 13145301-13146630 processed_transcript
ENSMUSG00000025935 (Tram1)
translocating chain-associating membrane protein 1 		ENSMUST00000027068 (Tram1-001) 13564698-13589910 protein_coding
ENSMUST00000185447 (Tram1-004) 13576144-13579798 retained_intron
ENSMUST00000188377 (Tram1-003) 13578118-13589875 nonsense_mediated_decay
ENSMUSG00000101171 (RP23-125I14.6)
predicted gene 7593 		ENSMUST00000187246 (RP23-125I14.6-001) 13407012-13407655 processed_pseudogene
ENSMUSG00000101476 (RP23-125I14.5)
predicted gene 29570 		ENSMUST00000185813 (RP23-125I14.5-001) 13376070-13388413 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BN_0001ENSG00000067167ENST00000262213ENST00000518678ENST00000520700ENST00000521049ENST00000521425ENSG00000140396ENST00000452400ENST00000518287ENST00000518363ENST00000519724ENST00000520416ENST00000521239ENST00000522054ENST00000524223ENSG00000207036ENST00000384309ENSG00000213003ENST00000519620ENSG00000241105ENST00000473114ENSG00000241204ENST00000465359ENSG00000253143ENST00000521051ENSG00000253967ENST00000520259CIL_0003BN_0002ENSMUSG00000005886ENSMUST00000006037ENSMUST00000068304ENSMUST00000081713ENSMUST00000124088ENSMUST00000133232ENSMUST00000139970ENSMUST00000143603ENSMUST00000145280ENSMUST00000146784ENSMUST00000147927ENSMUST00000185275ENSMUSG00000025935ENSMUST00000027068ENSMUST00000185447ENSMUST00000188377ENSMUSG00000101171ENSMUST00000187246ENSMUSG00000101476ENSMUST00000185813
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BN_0001ENSG00000067167ENST00000262213ENST00000521049ENST00000521425ENSG00000140396ENST00000452400ENST00000518287ENST00000518363ENSG00000207036ENST00000384309ENSG00000213003ENST00000519620ENSG00000241105ENST00000473114ENSG00000241204ENST00000465359ENSG00000253143ENST00000521051ENSG00000253967ENST00000520259CIL_0003BN_0002ENSMUSG00000005886ENSMUST00000006037ENSMUST00000068304ENSMUST00000081713ENSMUST00000145280ENSMUSG00000025935ENSMUST00000027068ENSMUST00000188377ENSMUSG00000101171ENSMUST00000187246ENSMUSG00000101476ENSMUST00000185813
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067167 ENST00000262213 36.901±0.00 31.630±0.00 7.930±0.00 8.190±4.70 20.838±10.21 22.749±12.44 8.840±5.56 39.948±19.87 32.584±24.20 38.622±22.28 6.834±0.00 21.589±10.09 29.849±10.60 18.444±16.43
ENST00000518678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.586±0.00 N/A 11.019±0.00
ENST00000521425 N/A N/A N/A N/A 2.043±0.00 1.204±0.00 N/A N/A N/A N/A N/A N/A N/A 5.253±0.00
ENSG00000140396 ENST00000452400 2.433±0.00 1.212±0.00 N/A 3.812±0.20 2.283±0.08 3.386±0.84 2.767±1.36 2.285±0.46 2.669±1.32 2.669±1.54 0.955±0.00 2.944±1.61 1.511±0.18 3.713±0.00
ENST00000518287 N/A N/A N/A N/A 1.183±0.00 N/A 1.041±0.00 N/A 1.476±0.00 N/A 1.071±0.00 N/A N/A N/A
ENST00000518363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.403±0.00 N/A N/A
ENST00000519724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207036 ENST00000384309 N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213003 ENST00000519620 0.221±0.00 0.175±0.00 N/A N/A 0.303±0.27 N/A N/A 1.005±0.86 0.076±0.00 N/A 0.025±0.00 0.252±0.00 0.111±0.00 0.053±0.00
ENSG00000241105 ENST00000473114 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00
ENSG00000241204 ENST00000465359 N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.031±0.00 N/A 0.030±0.00 N/A N/A 0.095±0.00
ENSG00000253143 ENST00000521051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A
ENSG00000253967 ENST00000520259 0.100±0.00 0.179±0.00 N/A 0.092±0.00 0.053±0.04 0.053±0.00 0.078±0.00 0.104±0.00 0.028±0.01 0.104±0.01 0.060±0.00 0.058±0.04 0.996±0.11 0.295±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005886 ENSMUST00000006037 5.137±2.51 4.508±1.66 3.199±0.00 5.516±3.27 5.243±2.08 4.941±0.73 2.632±0.83 4.846±1.45 2.087±0.54 3.843±0.84 N/A 7.025±2.75 4.768±3.87 10.881±5.35
ENSMUST00000068304 2.588±1.21 3.486±1.08 2.045±0.00 3.786±1.91 2.681±1.09 3.615±1.84 2.441±1.09 3.617±1.68 2.310±1.61 5.799±0.18 1.183±0.23 3.798±1.89 4.107±1.64 3.738±0.98
ENSMUST00000081713 N/A 2.358±0.79 N/A N/A 1.025±0.00 2.042±0.45 0.849±0.01 1.441±0.36 N/A 1.866±0.11 0.305±0.06 3.115±0.07 1.122±0.00 2.280±0.00
ENSMUST00000124088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145280 N/A N/A N/A 72.741±0.00 N/A N/A N/A N/A N/A N/A N/A 58.782±0.00 46.370±10.57 61.570±0.00
ENSMUST00000146784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025935 ENSMUST00000027068 17.214±3.90 10.753±1.30 23.400±13.77 7.172±4.00 20.008±2.00 15.927±2.27 8.560±0.13 23.837±1.65 34.992±4.36 29.471±3.54 3.714±0.51 16.391±6.49 32.407±23.64 39.628±20.35
ENSMUST00000185447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188377 N/A 31.372±15.18 N/A N/A 16.973±3.57 14.073±5.40 N/A N/A N/A 17.305±0.00 N/A 26.169±8.11 N/A N/A
ENSMUSG00000101171 ENSMUST00000187246 N/A N/A 0.072±0.00 N/A 0.152±0.01 N/A N/A N/A 0.011±0.00 N/A N/A 0.059±0.00 0.010±0.00 0.186±0.00
ENSMUSG00000101476 ENSMUST00000185813 N/A N/A N/A 0.080±0.07 N/A 0.224±0.00 N/A 0.069±0.00 0.022±0.01 N/A N/A 0.046±0.00 0.044±0.02 0.440±0.13

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