C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal PAS domain protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026077 Npas2 10090 + 1:39193731-39363234 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056815 Npas2-001 39194212-39363234 protein_coding
  ENSMUST00000172825 Npas2-003 39341555-39345466 processed_transcript
  ENSMUST00000173050 Npas2-002 39193731-39287615 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000056815ENSMUST00000173050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056815 0.494±0.00 3.565±1.24 0.391±0.00 0.548±0.39 2.530±0.18 14.082±1.78 0.446±0.46 1.293±0.00 0.051±0.01 3.158±1.27 N/A 0.376±0.11
ENSMUST00000173050 N/A 2.643±0.00 N/A 25.950±0.00 N/A N/A N/A N/A N/A 4.113±0.00 8.269±6.55 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HH CIL_0004HH_0002 CGP 1:38987814-39363234
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HI CIL_0004HI_0002 CGP 1:39193731-39371908

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0042745 IMP circadian sleep/wake cycle
GO:0045475 IMP locomotor rhythm
GO:0045739 IEA positive regulation of DNA repair
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0051775 IEA response to redox state
GO:0051879 IEA Hsp90 protein binding
GO:0060548 IEA negative regulation of cell death
GO:2001020 IEA regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016536 npas2 neuronal PAS domain protein 2 protein_coding Danio_rerio
ENSG00000170485 NPAS2 neuronal PAS domain protein 2 protein_coding Homo_sapiens

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