C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173050 Npas2-002 ENSMUSG00000026077 10090 + 1:39193731-39287615 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryPlacentaENSMUST00000173050
Transcript ID Adrenal Brain Ovary Placenta
ENSMUST00000173050 2.643±0.00 25.950±0.00 4.113±0.00 8.269±6.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HH CIL_0004HH_0002 CGP 1:38987814-39363234
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HI CIL_0004HI_0002 CGP 1:39193731-39371908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0042745 IMP circadian sleep/wake cycle
GO:0045475 IMP locomotor rhythm
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335681 NPAS2-001 protein_coding Homo_sapiens 0 468
ENST00000427413 NPAS2-004 protein_coding Homo_sapiens 0 294
ENST00000448812 NPAS2-007 protein_coding Homo_sapiens 0 230
ENST00000451740 NPAS2-005 protein_coding Homo_sapiens 0 211
ENST00000486017 NPAS2-008 processed_transcript Homo_sapiens 0 230

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