C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056815 Npas2-001 ENSMUSG00000026077 10090 + 1:39194212-39363234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryTestisENSMUST00000056815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Testis
ENSMUST00000056815 0.494±0.00 3.565±1.24 0.391±0.00 0.548±0.39 2.530±0.18 14.082±1.78 0.446±0.46 1.293±0.00 0.051±0.01 3.158±1.27 0.376±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HH CIL_0004HH_0002 CGP 1:38987814-39363234
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HI CIL_0004HI_0002 CGP 1:39193731-39371908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0042745 IMP circadian sleep/wake cycle
GO:0045475 IMP locomotor rhythm
GO:0045739 IEA positive regulation of DNA repair
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0051775 IEA response to redox state
GO:0051879 IEA Hsp90 protein binding
GO:0060548 IEA negative regulation of cell death
GO:2001020 IEA regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335681 NPAS2-001 protein_coding Homo_sapiens 0 2913
ENST00000427413 NPAS2-004 protein_coding Homo_sapiens 0 689
ENST00000433408 NPAS2-012 protein_coding Homo_sapiens 0 706
ENST00000448812 NPAS2-007 protein_coding Homo_sapiens 0 872
ENST00000450763 NPAS2-010 protein_coding Homo_sapiens 0 412
ENST00000451740 NPAS2-005 protein_coding Homo_sapiens 0 444
ENST00000471974 NPAS2-009 processed_transcript Homo_sapiens 0 444
ENST00000474550 NPAS2-002 retained_intron Homo_sapiens 0 765
ENST00000486017 NPAS2-008 processed_transcript Homo_sapiens 0 869
ENST00000492373 NPAS2-006 processed_transcript Homo_sapiens 0 728
ENST00000495559 NPAS2-003 retained_intron Homo_sapiens 0 671

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