C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-C motif) ligand 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027351 Ccl20-002 ENSMUSG00000026166 10090 + 1:83116766-83119166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverTestisENSMUST00000027351
Transcript ID Colon Kidney Liver Testis
ENSMUST00000027351 0.951±0.00 0.050±0.00 0.011±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0002 CGP 1:83116766-83210574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IDA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006955 IEA immune response
GO:0008009 IEA chemokine activity
GO:0060326 IEA cell chemotaxis
GO:2000406 ISO positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358813 CCL20-004 protein_coding Homo_sapiens 0 209
ENST00000409189 CCL20-001 protein_coding Homo_sapiens 0 226
ENST00000473642 CCL20-003 processed_transcript Homo_sapiens 0 209

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