C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-C motif) ligand 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186832 Ccl20-003 ENSMUSG00000026166 10090 + 1:83116793-83119167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000186832
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000186832 0.038±0.00 0.012±0.00 0.056±0.01 0.095±0.00 0.043±0.00 0.031±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0002 CGP 1:83116766-83210574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IDA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0060326 IEA cell chemotaxis
GO:2000406 ISO positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358813 CCL20-004 protein_coding Homo_sapiens 0 298
ENST00000409189 CCL20-001 protein_coding Homo_sapiens 0 329
ENST00000473642 CCL20-003 processed_transcript Homo_sapiens 0 298

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