C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-C motif) ligand 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113437 Ccl20-001 ENSMUSG00000026166 10090 + 1:83116774-83119167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungENSMUST00000113437
Transcript ID Brain Breast Colon Heart Kidney Liver Lung
ENSMUST00000113437 0.022±0.01 0.221±0.04 8.644±1.05 0.108±0.05 0.121±0.03 0.162±0.01 0.364±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0002 CGP 1:83116766-83210574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IDA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006935 IEA chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0042060 IEA wound healing
GO:0050726 IEA positive regulation of interleukin-1 alpha biosynthetic process
GO:0051770 IEA positive regulation of nitric-oxide synthase biosynthetic process
GO:0060326 IEA cell chemotaxis
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071223 IEA cellular response to lipoteichoic acid
GO:0071310 IEA cellular response to organic substance
GO:2000406 ISO positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358813 CCL20-004 protein_coding Homo_sapiens 0 318
ENST00000409189 CCL20-001 protein_coding Homo_sapiens 0 316
ENST00000473642 CCL20-003 processed_transcript Homo_sapiens 0 303

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