C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027357 Rnf25-001 ENSMUSG00000026171 10090 - 1:74593748-74601397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027357 13.696±4.93 7.045±1.87 21.770±4.06 23.469±19.94 11.167±1.17 10.855±0.96 4.048±1.94 8.679±2.59 9.538±4.48 9.491±0.62 4.949±1.41 9.156±2.92 15.174±6.55 55.704±30.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000654 CIL_000654_0002 CGP 1:74588289-74601397
CIL_0006PW CIL_0006PW_0002 CGP 1:74593748-74636894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051059 ISS NF-kappaB binding
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295704 RNF25-001 protein_coding Homo_sapiens 0 1454
ENST00000423170 RNF25-004 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000463188 RNF25-003 retained_intron Homo_sapiens 0 750
ENST00000473034 RNF25-002 retained_intron Homo_sapiens 0 1194
ENST00000497832 RNF25-005 retained_intron Homo_sapiens 0 302

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