Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000651_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000127831-ENSG00000135913	CGP	9606	2:218419092-218568361
Gene	Transcript	Position	Biotype
ENSG00000127831 (VIL1) villin 1	ENST00000248444 (VIL1-001)	218419092-218453295	protein_coding
	ENST00000392114 (VIL1-002)	218419123-218449524	protein_coding
	ENST00000419986 (VIL1-005)	218432515-218436587	protein_coding
	ENST00000440053 (VIL1-003)	218423765-218431216	protein_coding
	ENST00000454069 (VIL1-004)	218419121-218428255	protein_coding
ENSG00000135913 (USP37) ubiquitin specific peptidase 37	ENST00000258399 (USP37-001)	218450251-218568361	protein_coding
	ENST00000338465 (USP37-003)	218528271-218568326	protein_coding
	ENST00000415516 (USP37-002)	218453501-218568341	protein_coding
	ENST00000418019 (USP37-005)	218454815-218568291	protein_coding
	ENST00000454775 (USP37-004)	218453268-218568325	protein_coding
	ENST00000466523 (USP37-008)	218495775-218498413	processed_transcript
	ENST00000473554 (USP37-010)	218466133-218479715	processed_transcript
	ENST00000475553 (USP37-009)	218476943-218486378	processed_transcript
	ENST00000478329 (USP37-006)	218510007-218549824	processed_transcript
	ENST00000484018 (USP37-011)	218474750-218476958	processed_transcript
	ENST00000486242 (USP37-007)	218497769-218514428	processed_transcript
ENSG00000222714 (RN7SKP38) RNA, 7SK small nuclear pseudogene 38	ENST00000410782 (RN7SKP38-201)	218500729-218501037	misc_RNA

CIL_000651_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000026175-ENSMUSG00000033364	CGP	10090	1:74409376-74544284
Gene	Transcript	Position	Biotype
ENSMUSG00000026173 (Plcd4) phospholipase C, delta 4	ENSMUST00000027362 (Plcd4-001)	74544364-74565977	protein_coding
	ENSMUST00000067916 (Plcd4-201)	74542888-74567794	protein_coding
	ENSMUST00000113745 (Plcd4-005)	74542903-74560606	retained_intron
	ENSMUST00000113747 (Plcd4-004)	74542903-74565977	protein_coding
	ENSMUST00000113749 (Plcd4-202)	74542888-74567794	protein_coding
	ENSMUST00000113750 (Plcd4-006)	74542903-74565977	protein_coding
	ENSMUST00000135111 (Plcd4-007)	74564437-74565626	retained_intron
	ENSMUST00000141412 (Plcd4-003)	74542888-74567794	nonsense_mediated_decay
	ENSMUST00000152707 (Plcd4-002)	74544364-74565977	nonsense_mediated_decay
	ENSMUST00000185411 (Plcd4-008)	74544360-74546271	retained_intron
	ENSMUST00000189956 (Plcd4-009)	74560427-74565301	processed_transcript
ENSMUSG00000026174 (Rqcd1) rcd1 (required for cell differentiation) homolog 1 (S. pombe)	ENSMUST00000087215 (Rqcd1-001)	74506058-74530842	protein_coding
	ENSMUST00000137100 (Rqcd1-002)	74506060-74527087	processed_transcript
	ENSMUST00000147810 (Rqcd1-003)	74523527-74528177	retained_intron
ENSMUSG00000026175 (Vil1) villin 1	ENSMUST00000027366 (Vil1-001)	74409376-74435559	protein_coding
	ENSMUST00000159749 (Vil1-003)	74419053-74423018	protein_coding
	ENSMUST00000161087 (Vil1-002)	74421416-74423011	retained_intron
	ENSMUST00000163018 (Vil1-004)	74423686-74425966	retained_intron
ENSMUSG00000033364 (Usp37) ubiquitin specific peptidase 37	ENSMUST00000044260 (Usp37-002)	74435511-74505803	protein_coding
	ENSMUST00000186282 (Usp37-007)	74495718-74505806	protein_coding
	ENSMUST00000187590 (Usp37-005)	74499956-74506283	processed_transcript
	ENSMUST00000188012 (Usp37-004)	74439127-74467574	processed_transcript
	ENSMUST00000189257 (Usp37-001)	74437730-74544284	protein_coding
	ENSMUST00000190592 (Usp37-006)	74499872-74505791	retained_intron
	ENSMUST00000191058 (Usp37-003)	74449502-74505785	retained_intron

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000127831

ENST00000248444

N/A

0.409±0.00

N/A

0.906±0.00

3.366±2.66

N/A

0.397±0.00

N/A

4.256±0.00

N/A

ENST00000392114

N/A

1.520±0.00

N/A

8.325±3.37

N/A

3.539±0.43

4.471±0.00

N/A

10.751±3.95

N/A

ENST00000419986

N/A

ENST00000440053

N/A

19.210±0.00

N/A

76.358±0.00

N/A

ENST00000454069

N/A

ENSG00000135913

ENST00000258399

N/A

0.885±0.00

1.128±0.00

0.898±0.05

0.627±0.16

2.961±0.00

0.647±0.09

0.822±0.30

2.032±0.00

1.331±0.52

0.725±0.00

1.873±0.72

0.590±0.00

1.487±0.52

ENST00000338465

N/A

1.047±0.00

N/A

ENST00000415516

N/A

ENST00000418019

N/A

0.911±0.00

1.318±0.00

N/A

0.496±0.00

N/A

0.945±0.00

N/A

2.614±0.00

N/A

N/A

N/A

N/A

N/A

N/A

N/A

ENSG00000222714

ENST00000410782

N/A

0.505±0.00

N/A

0.362±0.00

N/A

0.190±0.00

0.353±0.00

0.544±0.00

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000026173

ENSMUST00000027362

N/A

17.574±9.22

ENSMUST00000067916

N/A

ENSMUST00000113745

N/A

ENSMUST00000113747

N/A

5.158±0.00

6.850±1.51

N/A

28.334±11.33

N/A

N/A

N/A

N/A

N/A

N/A

8.000±1.69

ENSMUST00000185411

N/A

ENSMUST00000189956

N/A

ENSMUSG00000026174

ENSMUST00000087215

12.796±4.27

9.780±0.83

10.853±1.30

21.374±2.37

9.516±2.38

N/A

4.891±0.80

10.818±0.90

13.945±8.11

9.338±0.64

4.992±0.32

15.672±6.81

18.058±7.15

14.750±0.38

ENSMUST00000137100

N/A

ENSMUST00000147810

N/A

ENSMUSG00000026175

ENSMUST00000027366

N/A

100.992±12.42

N/A

36.507±3.05

N/A

22.202±0.67

N/A

ENSMUST00000159749

N/A

ENSMUST00000161087

N/A

ENSMUST00000163018

N/A

ENSMUSG00000033364

ENSMUST00000044260

1.356±0.00

1.537±0.14

0.607±0.00

3.368±1.22

2.038±0.12

N/A

0.826±0.26

N/A

2.636±1.68

1.774±0.32

0.856±0.39

3.204±0.78

3.344±0.64

1.973±0.00

ENSMUST00000186282

N/A

ENSMUST00000187590

N/A

ENSMUST00000188012

N/A

4.723±0.00

N/A

7.218±0.00

9.098±0.00

26.740±18.07

ENSMUST00000189257

N/A

6.243±1.38

ENSMUST00000190592

N/A

ENSMUST00000191058

N/A

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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