C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026202 Tuba4a 10090 - 1:75214228-75219865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079464 Tuba4a-002 75214972-75218624 protein_coding
  ENSMUST00000186213 Tuba4a-001 75214228-75219294 protein_coding
  ENSMUST00000186758 Tuba4a-004 75216857-75219865 protein_coding
  ENSMUST00000186971 Tuba4a-008 75215956-75217414 protein_coding
  ENSMUST00000187103 Tuba4a-005 75216435-75219243 retained_intron
  ENSMUST00000188593 Tuba4a-003 75215612-75217434 protein_coding
  ENSMUST00000189131 Tuba4a-007 75216913-75218888 protein_coding
  ENSMUST00000190717 Tuba4a-006 75216889-75218888 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079464ENSMUST00000186213ENSMUST00000186758ENSMUST00000186971ENSMUST00000187103ENSMUST00000188593
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079464 N/A 90.397±0.00 15.214±3.22 N/A 59.098±3.80 26.335±0.00 39.601±17.28 15.816±3.25 52.974±10.74 N/A 8.033±3.11 23.447±3.18
ENSMUST00000186213 7.981±1.61 N/A N/A N/A N/A N/A N/A N/A N/A 5.586±0.00 N/A N/A
ENSMUST00000186758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.316±11.58
ENSMUST00000186971 N/A N/A 48.098±0.00 N/A N/A N/A N/A N/A N/A N/A 28.324±5.91 N/A
ENSMUST00000187103 N/A N/A N/A N/A N/A N/A 108.019±16.28 N/A 104.488±10.85 N/A N/A N/A
ENSMUST00000188593 15.978±0.00 81.518±0.00 33.377±7.87 38.450±5.74 146.262±15.95 70.541±12.99 84.333±28.70 29.968±10.82 79.683±14.30 N/A 20.238±5.93 54.545±13.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EH CIL_0006EH_0002 CGP 1:75198236-75215606
CIL_0006NV CIL_0006NV_0002 CGP 1:75210838-75219865

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031164 tuba8l2 tubulin, alpha 8 like 2 protein_coding Danio_rerio
ENSG00000127824 TUBA4A tubulin, alpha 4a protein_coding Homo_sapiens

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