C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187103 Tuba4a-005 ENSMUSG00000026202 10090 - 1:75216435-75219243 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSMUST00000187103
Transcript ID Liver Muscle
ENSMUST00000187103 108.019±16.28 104.488±10.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EH CIL_0006EH_0002 CGP 1:75198236-75215606
CIL_0006NV CIL_0006NV_0002 CGP 1:75210838-75219865

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 2.00386e-43 180
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 3.00018e-42 176
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 6e-39 165
ENSDART00000016360 protein_coding Danio_rerio 5e-35 152
ENSDART00000102713 protein_coding Danio_rerio 5e-35 152
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 1e-30 137
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 593
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 545
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 237
ENST00000425551 TUBA4A-009 protein_coding Homo_sapiens 0 512
ENST00000427737 TUBA4A-010 protein_coding Homo_sapiens 0 545
ENST00000447205 TUBA4A-003 protein_coding Homo_sapiens 0 545
ENST00000456818 TUBA4A-004 protein_coding Homo_sapiens 0 545
ENST00000462806 TUBA4A-007 retained_intron Homo_sapiens 0 761
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 340
ENST00000475683 TUBA4A-005 retained_intron Homo_sapiens 0 368
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 233
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 327

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