C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079464 Tuba4a-002 ENSMUSG00000026202 10090 - 1:75214972-75218624 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000079464
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000079464 90.397±0.00 15.214±3.22 59.098±3.80 26.335±0.00 39.601±17.28 15.816±3.25 52.974±10.74 8.033±3.11 23.447±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EH CIL_0006EH_0002 CGP 1:75198236-75215606
CIL_0006NV CIL_0006NV_0002 CGP 1:75210838-75219865

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1339
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1339
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1317
ENSDART00000016360 protein_coding Danio_rerio 0 1105
ENSDART00000102713 protein_coding Danio_rerio 0 1105
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 1094
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 1007
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 2039
ENST00000292748 TUBA3FP-002 processed_transcript Homo_sapiens 0 477
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1327
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1327
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1323
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 1085
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1275
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1085
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1376
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1376
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 2039
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 778
ENST00000400113 TUBA3C-002 protein_coding Homo_sapiens 0 1275
ENST00000409047 TUBA3D-003 processed_transcript Homo_sapiens 0 403
ENST00000409638 STK16-001 protein_coding Homo_sapiens 2e-23 115
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 1085
ENST00000422086 TUBA3FP-003 processed_transcript Homo_sapiens 0 477
ENST00000425551 TUBA4A-009 protein_coding Homo_sapiens 0 508
ENST00000427737 TUBA4A-010 protein_coding Homo_sapiens 0 833
ENST00000442739 TUBA3FP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 619
ENST00000442868 RP11-480I12.5-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 638
ENST00000447205 TUBA4A-003 protein_coding Homo_sapiens 0 728
ENST00000456818 TUBA4A-004 protein_coding Homo_sapiens 0 767
ENST00000462806 TUBA4A-007 retained_intron Homo_sapiens 0 544
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 1192
ENST00000473885 TUBA4B-003 processed_transcript Homo_sapiens 0 617
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1085
ENST00000475683 TUBA4A-005 retained_intron Homo_sapiens 0 318
ENST00000485041 TUBA4B-002 processed_transcript Homo_sapiens 0 617
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1445
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 1230
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 1088
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 998
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 1192
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1323
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1376
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1092
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1327
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1323
ENST00000608634 TUBA8-005 protein_coding Homo_sapiens 0 477
ENST00000618094 TUBA3C-201 protein_coding Homo_sapiens 0 1160

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