C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188593 Tuba4a-003 ENSMUSG00000026202 10090 - 1:75215612-75217434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000188593
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000188593 15.978±0.00 81.518±0.00 33.377±7.87 38.450±5.74 146.262±15.95 70.541±12.99 84.333±28.70 29.968±10.82 79.683±14.30 20.238±5.93 54.545±13.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EH CIL_0006EH_0002 CGP 1:75198236-75215606
CIL_0006NV CIL_0006NV_0002 CGP 1:75210838-75219865

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1022
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1009
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1005
ENSDART00000016360 protein_coding Danio_rerio 0 869
ENSDART00000102713 protein_coding Danio_rerio 0 869
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 865
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 780
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1386
ENST00000292748 TUBA3FP-002 processed_transcript Homo_sapiens 0 475
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 983
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 983
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 983
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 891
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 926
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 891
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1042
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1042
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1386
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 778
ENST00000400113 TUBA3C-002 protein_coding Homo_sapiens 0 926
ENST00000409047 TUBA3D-003 processed_transcript Homo_sapiens 0 276
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 891
ENST00000422086 TUBA3FP-003 processed_transcript Homo_sapiens 0 475
ENST00000425551 TUBA4A-009 protein_coding Homo_sapiens 0 315
ENST00000427737 TUBA4A-010 protein_coding Homo_sapiens 0 315
ENST00000442739 TUBA3FP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 619
ENST00000442868 RP11-480I12.5-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 638
ENST00000447205 TUBA4A-003 protein_coding Homo_sapiens 0 315
ENST00000456818 TUBA4A-004 protein_coding Homo_sapiens 0 315
ENST00000462806 TUBA4A-007 retained_intron Homo_sapiens 0 315
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 856
ENST00000473885 TUBA4B-003 processed_transcript Homo_sapiens 0 617
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 891
ENST00000475683 TUBA4A-005 retained_intron Homo_sapiens 0 315
ENST00000485041 TUBA4B-002 processed_transcript Homo_sapiens 0 617
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1103
ENST00000490341 TUBA4B-001 processed_transcript Homo_sapiens 0 1103
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 857
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 379
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 893
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 983
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 955
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 983
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 983
ENST00000608634 TUBA8-005 protein_coding Homo_sapiens 0 477
ENST00000618094 TUBA3C-201 protein_coding Homo_sapiens 0 811

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