C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 4a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127824 TUBA4A 9606 - 2:219249711-219278170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248437 TUBA4A-001 219249711-219254032 protein_coding
  ENST00000392088 TUBA4A-002 219249711-219254608 protein_coding
  ENST00000398989 TUBA4A-011 219250772-219277876 protein_coding
  ENST00000425551 TUBA4A-009 219251587-219252993 protein_coding
  ENST00000427737 TUBA4A-010 219251113-219278170 protein_coding
  ENST00000447205 TUBA4A-003 219251194-219253354 protein_coding
  ENST00000456818 TUBA4A-004 219251173-219253145 protein_coding
  ENST00000462806 TUBA4A-007 219251194-219253916 retained_intron
  ENST00000475683 TUBA4A-005 219251539-219253916 retained_intron
  ENST00000498660 TUBA4A-006 219250729-219253901 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248437ENST00000392088ENST00000398989ENST00000498660
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248437 31.969±0.00 34.070±15.58 15.677±0.00 17.043±0.00 4.796±0.00 34.053±0.00 3.080±0.00 60.684±0.00 N/A 17.627±9.55 8.909±0.00 N/A
ENST00000392088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.547±0.00
ENST00000398989 N/A 41.625±0.00 N/A N/A N/A N/A N/A N/A 46.255±0.00 N/A N/A N/A
ENST00000498660 N/A N/A N/A N/A N/A N/A N/A N/A 31.031±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EH CIL_0006EH_0001 CGP 2:219236606-219250337
CIL_0006NV CIL_0006NV_0001 CGP 2:219245455-219278170

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0002576 TAS platelet degranulation
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005576 TAS extracellular region
GO:0005829 TAS cytosol
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0007596 TAS blood coagulation
GO:0030168 TAS platelet activation
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031164 tuba8l2 tubulin, alpha 8 like 2 protein_coding Danio_rerio
ENSMUSG00000026202 Tuba4a tubulin, alpha 4A protein_coding Mus_musculus

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