C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 7, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026312 Cdh7 10090 + 1:109982431-110140157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027542 Cdh7-201 109993982-110139189 protein_coding
  ENSMUST00000112701 Cdh7-001 109982710-110140157 protein_coding
  ENSMUST00000129923 Cdh7-003 109982981-109995323 protein_coding
  ENSMUST00000131464 Cdh7-005 109983229-110139195 nonsense_mediated_decay
  ENSMUST00000134301 Cdh7-007 110099295-110138058 protein_coding
  ENSMUST00000137092 Cdh7-002 109982431-109995955 protein_coding
  ENSMUST00000145188 Cdh7-006 109983006-109994382 protein_coding
  ENSMUST00000146282 Cdh7-004 109983281-109998669 protein_coding
  ENSMUST00000172005 Cdh7-202 109983737-110139001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverOvaryPlacentaTestisENSMUST00000027542ENSMUST00000112701ENSMUST00000129923ENSMUST00000131464ENSMUST00000137092ENSMUST00000146282ENSMUST00000172005
Transcript ID Adipose Brain Colon Liver Ovary Placenta Testis
ENSMUST00000027542 0.017±0.00 N/A N/A 0.004±0.00 N/A N/A N/A
ENSMUST00000112701 N/A 0.617±0.00 N/A N/A 0.085±0.01 0.002±0.00 N/A
ENSMUST00000129923 N/A N/A N/A 0.012±0.00 0.008±0.00 N/A 0.009±0.00
ENSMUST00000131464 N/A 0.539±0.00 0.048±0.00 N/A N/A N/A N/A
ENSMUST00000137092 N/A N/A 0.038±0.00 N/A N/A 0.008±0.00 N/A
ENSMUST00000146282 0.017±0.00 0.627±0.03 N/A 0.006±0.00 0.003±0.00 0.004±0.00 N/A
ENSMUST00000172005 N/A 1.833±0.00 N/A 0.006±0.00 0.007±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076K CIL_00076K_0002 CGP 1:107590006-110140157
CIL_0005QJ CIL_0005QJ_0002 CGP 1:109982431-110977584

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017649 CDH7 (1 of 2) cadherin 7, type 2 protein_coding Danio_rerio
ENSDARG00000023542 cdh7 cadherin 7, type 2 protein_coding Danio_rerio
ENSG00000081138 CDH7 cadherin 7, type 2 protein_coding Homo_sapiens

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