C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 7, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000081138 CDH7 9606 + 18:65750252-65890341 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323011 CDH7-002 65750252-65880939 protein_coding
  ENST00000397968 CDH7-001 65750921-65890341 protein_coding
  ENST00000536984 CDH7-003 65750653-65864125 protein_coding
  ENST00000581601 CDH7-004 65763008-65803810 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323011ENST00000397968ENST00000536984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323011 N/A N/A N/A 0.744±0.17 0.014±0.00 N/A N/A N/A N/A 0.013±0.00 N/A 0.025±0.01 0.054±0.00 0.244±0.08
ENST00000397968 0.010±0.00 0.009±0.00 0.004±0.00 0.313±0.01 0.005±0.00 0.008±0.00 0.004±0.00 0.005±0.00 0.004±0.00 0.006±0.00 0.001±0.00 0.004±0.00 0.007±0.00 0.044±0.00
ENST00000536984 0.014±0.00 0.109±0.00 N/A N/A 0.041±0.00 0.011±0.00 0.019±0.00 0.037±0.00 0.012±0.00 0.046±0.00 0.006±0.00 0.011±0.00 N/A 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076K CIL_00076K_0001 CGP 18:63969925-65890341
CIL_0005QJ CIL_0005QJ_0001 CGP 18:65750252-66604138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017649 CDH7 (1 of 2) cadherin 7, type 2 protein_coding Danio_rerio
ENSDARG00000023542 cdh7 cadherin 7, type 2 protein_coding Danio_rerio
ENSMUSG00000026312 Cdh7 cadherin 7, type 2 protein_coding Mus_musculus

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