C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026611 Spata17 10090 - 1:187044648-187215465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027908 Spata17-201 187048407-187215446 protein_coding
  ENSMUST00000110945 Spata17-003 187135293-187215421 protein_coding
  ENSMUST00000183469 Spata17-002 187188861-187215446 processed_transcript
  ENSMUST00000183656 Spata17-006 187135300-187143084 processed_transcript
  ENSMUST00000183819 Spata17-001 187044648-187215465 protein_coding
  ENSMUST00000183931 Spata17-007 187117263-187215437 protein_coding
  ENSMUST00000183996 Spata17-005 187112484-187142904 protein_coding
  ENSMUST00000184543 Spata17-004 187135293-187143097 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027908ENSMUST00000110945ENSMUST00000183469ENSMUST00000183656ENSMUST00000183819ENSMUST00000183931ENSMUST00000183996ENSMUST00000184543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027908 0.129±0.10 N/A N/A N/A 0.090±0.03 0.089±0.01 N/A N/A 0.047±0.02 0.561±0.00 0.057±0.00 0.248±0.00 N/A N/A
ENSMUST00000110945 N/A N/A 0.022±0.00 0.075±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A 16.578±6.84
ENSMUST00000183469 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.206±0.00 0.049±0.02 N/A N/A 0.367±0.00 0.068±0.02 N/A
ENSMUST00000183656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.526±1.12
ENSMUST00000183819 0.132±0.02 0.530±0.27 0.018±0.00 0.220±0.09 0.146±0.06 0.146±0.03 0.144±0.00 0.459±0.22 0.073±0.03 1.056±0.05 0.042±0.02 0.879±0.38 0.227±0.09 24.029±0.73
ENSMUST00000183931 N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183996 0.320±0.17 0.353±0.13 0.037±0.01 N/A 0.288±0.20 0.463±0.28 0.172±0.00 1.486±0.87 0.081±0.02 1.081±0.18 0.063±0.00 2.725±1.09 N/A 19.815±2.74
ENSMUST00000184543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.627±4.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086U CIL_00086U_0002 VISTA 1:186608316-187210077
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005516 IEA calmodulin binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054414 spata17 spermatogenesis associated 17 protein_coding Danio_rerio
ENSG00000162814 SPATA17 spermatogenesis associated 17 protein_coding Homo_sapiens

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